Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17530 703 / 0 Protein kinase superfamily protein (.1.2.3) AT4G35500 681 / 0 Protein kinase superfamily protein (.1.2) AT5G22840 476 / 3e-165 Protein kinase superfamily protein (.1) AT3G53030 256 / 6e-80 SRPK4 ser/arg-rich protein kinase 4 (.1) AT3G44850 253 / 2e-78 Protein kinase superfamily protein (.1) AT4G24740 157 / 2e-43 AME1, AFC2 FUS3-complementing gene 2 (.1.2) AT4G32660 157 / 2e-43 AME3 Protein kinase superfamily protein (.1.2.3) AT3G53570 156 / 2e-42 AME2, AFC1 FUS3-complementing gene 1 (.1.2.3.4) AT5G35980 96 / 9e-21 YAK1 yeast YAK1-related gene 1 (.1.2) AT1G73450 94 / 5e-20 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063100 [exp] 797 / 0 AT2G17530 679 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.006G117800 [exp] 266 / 2e-83 AT3G53030 740 / 0.0 ser/arg-rich protein kinase 4 (.1) Potri.004G190400 [exp] 258 / 2e-80 AT3G44850 769 / 0.0 Protein kinase superfamily protein (.1) Potri.009G151500 [exp] 253 / 2e-78 AT3G44850 735 / 0.0 Protein kinase superfamily protein (.1) Potri.006G244400 [exp] 157 / 3e-43 AT4G32660 634 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.012G089700 [exp] 156 / 5e-43 AT4G24740 744 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.015G085700 [exp] 156 / 6e-43 AT4G24740 747 / 0.0 FUS3-complementing gene 2 (.1.2) Potri.016G079900 [exp] 145 / 7e-39 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4) Potri.010G049100 [exp] 144 / 2e-38 AT4G24740 642 / 0.0 FUS3-complementing gene 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035984 [exp] 701 / 0 AT4G35500 694 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016690 [exp] 701 / 0 AT4G35500 683 / 0.0 Protein kinase superfamily protein (.1.2) Lus10020516 [exp] 457 / 2e-158 AT3G53030 647 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10020515 [exp] 249 / 6e-77 AT5G22840 684 / 0.0 Protein kinase superfamily protein (.1) Lus10005363 [exp] 249 / 9e-77 AT3G44850 681 / 0.0 Protein kinase superfamily protein (.1) Lus10005364 [exp] 246 / 8e-76 AT3G53030 653 / 0.0 ser/arg-rich protein kinase 4 (.1) Lus10019458 [exp] 157 / 4e-43 AT4G24740 729 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10036878 [exp] 155 / 2e-42 AT4G24740 662 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10043309 [exp] 154 / 4e-42 AT4G24740 730 / 0.0 FUS3-complementing gene 2 (.1.2) Lus10024431 [exp] 154 / 5e-42 AT3G53570 732 / 0.0 FUS3-complementing gene 1 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G102100.1 pacid=42805048 polypeptide=Potri.005G102100.1.p locus=Potri.005G102100 ID=Potri.005G102100.1.v4.1 annot-version=v4.1 ATGTCGTGTTCTTCGTCGTCGGCATCGGAGGAAGATGAAGAGGGGATCGATTCCTACCGCAAAGGAGGTTATCATGCGGTGAGAGTAGGGGATCAGTTCT CCGGTGGCCGTTATATTGCACAGAGAAAGCTGGGGTGGGGCCAGTTTTCTACTGTTTGGCTCGCTTACGATACTCGATCCTCTAAATACGTTGCTCTTAA GATCCAGAAAAGTGCAGCACAATTTGCTCAAGCTGCGCTTCATGAGATTGAACTCCTTTCAGCCATAGCTAACAGTGACCCTTCAAATTCCAAGTGTGTT GTGCAACTGATTGACCACTTCAAGCATGCAGGGCCAAATGGGCAGCATCAGTGCATGGTCCTTGAATTTCTTGGTGACAGTTTATTGAGGTTAATCAGGC ATAATCGTTACAAAGGACTTGAATTGGATAAAGTTAGAGAGATCTGTAAATGCATTGTGACAGGTTTGGATTACTTGCATAGAGAACTTGGTATAATCCA CTCTGACCTAAAACCCGAAAATATTCTTCTCTTTTCCACCATTGATCCTGCCAAAGATCCAATTAGGTCTGGGCTCACACCAATCCTGGAAAGGCCTGAG GGAAACCATAATGGTACTTCCACTATGACTCTCATCGAGAAGAAGTTGAAAAGGAGGGCAAAGAGGGCAGTTGCTAAGATATCAGGAAGAAGAGTTTCAA TGGGAGGAGCCGTGCAAAAGCCTGAGCGATCTCTGGATGGGATTGATGTGAGGTGCAAGGTTGTTGATTTTGGAAATGCGTGTTGGGCTGATAAGCAGTT TGCAGAAGAAATTCAAACCAGACAGTATAGAGCTCCTGAAGTCATTTTGCGATCTGGGTATTCCTTCTCTGTTGATATGTGGTCTTTTGCTTGCACGGCG TTTGAGCTTGCTACTGGGGACATGTTGTTCGCTCCCAAGGATGGACAAGACTACAGTGAAGATGAGGATCACCTTGCTCTTATGATGGAACTCCTTGGAA AGATGCCAAGAAAGATAGCCATTGGAGGAGCTCTATCCAAGGATTATTTTGACAGGCATGGGGATCTTAAGAGGATTCGGAGGCTGAAGTTTTGGCCACT TGATCGCTTGCTGGTTGAAAAATACAAATTCTCTGAAAATGATGCTCGGGAGTTTGCGGAATTTCTTTGTCCCCTTTTTGATTTTACACCAGAGAAGCGG CCCACTGCCCAGCAGTGCCTGCAACACCCATGGCTCAATCTCAAAAGCTCTACGCAGAACGAGACTAAAAGTGAATCTAAGGTGGCGAAGTTGGGTGTTG GAGTGAGCAATCTGAAGGTGGGTAAGTGA
AA sequence Show only first row Show all	>Potri.005G102100.1 pacid=42805048 polypeptide=Potri.005G102100.1.p locus=Potri.005G102100 ID=Potri.005G102100.1.v4.1 annot-version=v4.1 MSCSSSSASEEDEEGIDSYRKGGYHAVRVGDQFSGGRYIAQRKLGWGQFSTVWLAYDTRSSKYVALKIQKSAAQFAQAALHEIELLSAIANSDPSNSKCV VQLIDHFKHAGPNGQHQCMVLEFLGDSLLRLIRHNRYKGLELDKVREICKCIVTGLDYLHRELGIIHSDLKPENILLFSTIDPAKDPIRSGLTPILERPE GNHNGTSTMTLIEKKLKRRAKRAVAKISGRRVSMGGAVQKPERSLDGIDVRCKVVDFGNACWADKQFAEEIQTRQYRAPEVILRSGYSFSVDMWSFACTA FELATGDMLFAPKDGQDYSEDEDHLALMMELLGKMPRKIAIGGALSKDYFDRHGDLKRIRRLKFWPLDRLLVEKYKFSENDAREFAEFLCPLFDFTPEKR PTAQQCLQHPWLNLKSSTQNETKSESKVAKLGVGVSNLKVGK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	0	1
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	2.00	0.9459
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	2.23	0.9517
AT3G15220			Protein kinase superfamily pro...		Potri.011G116300 [exp]	2.44	0.9489
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	3.16	0.9437
AT1G33490			unknown protein		Potri.013G095200 [exp]	4.58	0.9324
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	4.58	0.9470
AT1G01780	LIM	PLIM2b	PLIM2b, GATA type zinc finger ...		Potri.014G080900 [exp]	4.89	0.9378
AT2G43420			3-beta hydroxysteroid dehydrog...		Potri.007G131200 [exp]	6.70	0.9260
AT2G35880			TPX2 (targeting protein for Xk...		Potri.006G200400 [exp]	8.77	0.9212
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	8.83	0.9203	ARAC2.1

Compare expression of checked genes

Potri.005G102100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.