Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21630 887 / 0 Calcium-binding EF hand family protein (.1.2) AT1G20760 619 / 0 Calcium-binding EF hand family protein (.1) AT4G05520 78 / 2e-14 ATEHD2 EPS15 homology domain 2 (.1.2) AT3G20290 76 / 9e-14 ATEHD1 EPS15 homology domain 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063200 [exp] 1797 / 0 AT1G20760 669 / 0.0 Calcium-binding EF hand family protein (.1) Potri.002G008600 [exp] 530 / 5e-169 AT1G20760 825 / 0.0 Calcium-binding EF hand family protein (.1) Potri.005G253000 [exp] 526 / 3e-168 AT1G20760 629 / 0.0 Calcium-binding EF hand family protein (.1) Potri.011G022300 [exp] 80 / 6e-15 AT4G05520 876 / 0.0 EPS15 homology domain 2 (.1.2) Potri.001G356300 [exp] 76 / 1e-13 AT3G20290 938 / 0.0 EPS15 homology domain 1 (.1.2) Potri.002G008300 [exp] 62 / 1e-11 AT1G20760 57 / 5e-11 Calcium-binding EF hand family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016689 [exp] 1183 / 0 AT1G21630 806 / 0.0 Calcium-binding EF hand family protein (.1.2) Lus10035982 [exp] 686 / 0 AT1G21630 410 / 3e-129 Calcium-binding EF hand family protein (.1.2) Lus10012248 [exp] 663 / 0 AT1G20760 886 / 0.0 Calcium-binding EF hand family protein (.1) Lus10035983 [exp] 566 / 0 AT1G21630 454 / 4e-147 Calcium-binding EF hand family protein (.1.2) Lus10016028 [exp] 550 / 4e-177 AT1G20760 770 / 0.0 Calcium-binding EF hand family protein (.1) Lus10043181 [exp] 79 / 2e-14 AT3G20290 936 / 0.0 EPS15 homology domain 1 (.1.2) Lus10032563 [exp] 78 / 3e-14 AT3G20290 924 / 0.0 EPS15 homology domain 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF12763 [poplar] [flax] EF-hand_4 Cytoskeletal-regulatory complex EF hand
Representative CDS sequence Show only first row Show all	>Potri.005G102200.6 pacid=42805358 polypeptide=Potri.005G102200.6.p locus=Potri.005G102200 ID=Potri.005G102200.6.v4.1 annot-version=v4.1 ATGGCGAATAATACGGATCTATTCGATTCGTATTTTAGAAGAGCAGATTTAGACGGTGACGGTCAGATCAGCGGTGCTGAAGCCGTCGGTTTCTTTCAAG GCTCCAGTTTGCCTAAACAAGTCCTCGCACAGGTTTGGATGCATGCTGATCAGAGGAACGCAGGCTACCTTGGTAGACAAGAGTTCTATAATGCACTTAA ACTTGTTACTGTAGCACAGAGTAAGAGAGAGTTGACCCCAGAAATAGTGAAGGCAGCATTATATGGCCCTGCTTCAGCTAAAATTCCCGCTCCTCAAATC AACCTAGCAGCAACTCCTGCTCCTAAAACAGTGGCACCTGCTCCCCAGCTGTCTGGCACAACACCAGCATCATCACCAAATGTTGGCATCAGACCGCCAC AAGTGCCTGGAAATGCAGTCACAAACCAGCAGTATTTCCCATCCCAACAAGGGCAATTTACGAGGCAACCCCAACCCCAAACCCAAGCTATGCCTCCTAA TTCTTCTTCCCATCCACAACAAATTCTTGTCAGTCAAGGTATGCCCAGGGGAGGTACCGTGGTTGCTCCGCGACCCCTGAATTCAAACATCTCAACAGAT TGGCTTGGTGGAAGTGCAGCTGGCCTGACTTCACAAGGTCCCAGTAGAGGGATTGGTCATCCTGCTACTCAGGATGGATTTGGGCTTAGTGCACCAGGTT TTACACCCTCTTTTCAACCTAGACCACAAGTGACTGCTGGGCAGATAGCAGCCCCTACACCTAAACCACAAGAAGCAGCCATCACATCCAACCAACTAGC AACTAGGGATTCTAAATCAGTGGTTGTTTCTGGGAATGGATTTGCTTCAGACTCACTTTTTGGCGATGTATTTTCTGCCACTCCTGCTCAACCAAAGCAA AGTTCCTCATCATCTGCGCATTCTACAAGTAGCATACCTGTCTCGTCGGCTATTGTTTCATCTTCTGTCGGATCCCAACCTTCAGTTAAGCCAAGTTCCC TGGATTCCTTGCAGAGTACCTTTCCCCAGCAGCATGTGGGAGGGCAATCAACAGCAAGACCAAACCAGCAGGTTCCATCTCAAAGTGTCACCTCTGCTCC TTCAGCTGGTTTTTCTGTTGGAACTAGCAATGCAGCTCCCAGTCAATCCCAGCCTCCATGGCCGAGGATGACTCAATCTGATATTCAAAAGTATACAAAA GTGTTTGTGCAAGTTGATACAGATAGAGATGGAAAGCTTACCGGGGAACAGGCGCGCAACCTTTTCTTGAGTTGGAGGCTACCTAGAGAGGTGTTAAAAA AAGTTTGGGATTTATCTGATCAAGATAATGACAGCATGCTTTCTTTGAGGGAGTTCTGTACTGCTCTTTATTTGATGGAGCGTTATAGAGAAGGCCGCCC TCTTCCTGCAACACTTCCAACCACTGTTATGTCCGATGAGACTCTGTTGTCTGCCACAAGTCACCCTGCAGCTTCATATGGTGGTGGATCTTGGGGACCT GCTTCCGTGGAAAAACAAATCTCAACAGGTTCGCGACAACAGCAAGTTGTGAGTGGTCCACGGCCTCCTCCTGCAGCTGCTGCAAGGCCACCAAGGCCTC CCACTGCTCCTCATGCTGATGAAAAACAGCCCACGCAACAAAAGCACAAAGTTCCTGTGCTTGAAAAACATCTTGTGCATCAACTCAGCCAAGAGGAGCA GGATACTCTCAGCTCAAAGTTCCAGGAGGCATCTCAGGCTGATAAAAAGGTTGAAGAACTGGAAAAGGAAATATTAGATTCTAGACAAAAAATTGAGTTT TATCGTGTCAAGATGCAGGAACTTATTTTATATAAAAGCCGATGTGACAATCGACTTAATGAGGTCACAACAAGGGTATCTGCTGATAAGCATGAGGTTG AGACATTGGGAAAGAAGTATGAAGAGAAATACAAGCAGAGTGGAGATGTTGCCTCCAAACTAACCATTGAAGAGGCTACATTTCGTGATATTCAGGAGAA AAAAATGGATTTATATCGGGCAATTGTTAAAATGGAAGAAGGGGGAGCTGCTGATGGTGTATTGAAGGAGCGTGCTGAGAATATCCAGTCGAATCTCGAG GAACTAGTAAAAACTGTGAATGAACGCTGCAAGCAGTATGGGTTGCGCTCTAAACCAACCTCATTGGTCGAGCTTCCATTTGGCTGGCAACATGGCATCC AGGAAGGAGCAGCTGATTGGGATGAAGGTTGGGACAAGCTTGAAGATGAAGGATTCATATTTGTCAAAGAGCTCACTTTGGATGTACAAAATGTTGTAGC CCCTCCAAAAGAAAAAACTTCAGTTCGAAAGGCCACTACTTCCACAGAAAAGGATTTAGGTGCTTCACCCTCAAATGCTGAGGTGAAGGCAGAAAAGGTT CCAAGTCCAAGAAAATCAAACTCTGAGAAAGATATTCCAGATCATCAACATGAGAATGGCAGTCTAAGAAGTCCTCCTGACAGTCCTGGAAGGACTACAA AAGAGAACCAATCCAATGAATTCCGAGACTCCCCATTCAAAGAAAGTGGCGCAGACAATTCACCCCATGCTAAAGAGACCCAAAGTGATGTGGGTGGTAC TGAATCTGTGCATTTTGGTGAAAAAATTGTTGAACCTGGCTGGGGTACGTTTGATACGCCTTATGATTCAGAATCAGTTTGGGGCTTTGATTCTGTCAGT GGCAAGGACATGGATTTTGGCATTAGTGAATTTGGTTTAAATCCAATAAAAACAGGGTCCTCACATGGAGATAACATGCCTTTAGGGAAGAGTTCATTTA TGTTTGATTCTGTTCCAAGCACCCCTGCTCATAACCAGGGGAACAGCTCCTATGCCTTTGCTGATTCTGTTCCAAGCACCCCTGCATATAACCAGGGGAA GAGCTCCTATGCCTTTGCAGATTCTGTTCCAAGCACCCCTGCATATAATCCAGGGAAGAGCTCTTATGCATTTGCAGATTCTGTTCCAAGCACCCCTGGC TATAACCCTGGAAAGAGTCCATTTTCATTTGCAGATTCTGTTCCAAGCACCCCAGCGTACAATTTTGGAAACTCTCCACGAAGGTTTAGTGAAGGTTCAG AGGACCACTCCTTTGACAGCTTCTCTAGGTTTGATTCATTTAACATGCAGGATGGTGGATTATTTCAATCTCCACGCCATTCACTTTCAAGATTTGATTC CATCCGCAGCACCAAGGACTCCGATCAAAGTTATGGATTCCCATCAAGATTTGATTCATTTAGAGAAGGAGGAGACTCTGATCAAAGCCATGAGTTTTCA AGGTTTGACTTTCTCAGAGAGCCCGATCAGAATCATGGGTTCTCGAGATTTGATTCCTTCAAAGAGTCTGATCAGAATCACGGGATCTCAAGGTTTGATT CCTTCAAAGAATCCGATCCTGGTCATGGGTTCTCATCAAGTTTCAGTTCATTTGGAGAATCTAGAGATCCTGATCATGGTCATGGATTCTCAAAGATGGA TTCGTTTAATGCCCATGACAGTGGGTTCTTCCAATCTTCTGACAATTCTTCCTTGGCAAGGTTTGATTCTGTTCGTGGCTCTAAAGACTCCGAGAATCAT GGGTTCCCATCATTCGATGATGCTGTTCCATTTGGCTCAAGTGGACCATTTAAGACATCACTAGAGAGTGAAACTCCACGCGGAAGTTCTGATAACTGGC GAGCTTTCTAG
AA sequence Show only first row Show all	>Potri.005G102200.6 pacid=42805358 polypeptide=Potri.005G102200.6.p locus=Potri.005G102200 ID=Potri.005G102200.6.v4.1 annot-version=v4.1 MANNTDLFDSYFRRADLDGDGQISGAEAVGFFQGSSLPKQVLAQVWMHADQRNAGYLGRQEFYNALKLVTVAQSKRELTPEIVKAALYGPASAKIPAPQI NLAATPAPKTVAPAPQLSGTTPASSPNVGIRPPQVPGNAVTNQQYFPSQQGQFTRQPQPQTQAMPPNSSSHPQQILVSQGMPRGGTVVAPRPLNSNISTD WLGGSAAGLTSQGPSRGIGHPATQDGFGLSAPGFTPSFQPRPQVTAGQIAAPTPKPQEAAITSNQLATRDSKSVVVSGNGFASDSLFGDVFSATPAQPKQ SSSSSAHSTSSIPVSSAIVSSSVGSQPSVKPSSLDSLQSTFPQQHVGGQSTARPNQQVPSQSVTSAPSAGFSVGTSNAAPSQSQPPWPRMTQSDIQKYTK VFVQVDTDRDGKLTGEQARNLFLSWRLPREVLKKVWDLSDQDNDSMLSLREFCTALYLMERYREGRPLPATLPTTVMSDETLLSATSHPAASYGGGSWGP ASVEKQISTGSRQQQVVSGPRPPPAAAARPPRPPTAPHADEKQPTQQKHKVPVLEKHLVHQLSQEEQDTLSSKFQEASQADKKVEELEKEILDSRQKIEF YRVKMQELILYKSRCDNRLNEVTTRVSADKHEVETLGKKYEEKYKQSGDVASKLTIEEATFRDIQEKKMDLYRAIVKMEEGGAADGVLKERAENIQSNLE ELVKTVNERCKQYGLRSKPTSLVELPFGWQHGIQEGAADWDEGWDKLEDEGFIFVKELTLDVQNVVAPPKEKTSVRKATTSTEKDLGASPSNAEVKAEKV PSPRKSNSEKDIPDHQHENGSLRSPPDSPGRTTKENQSNEFRDSPFKESGADNSPHAKETQSDVGGTESVHFGEKIVEPGWGTFDTPYDSESVWGFDSVS GKDMDFGISEFGLNPIKTGSSHGDNMPLGKSSFMFDSVPSTPAHNQGNSSYAFADSVPSTPAYNQGKSSYAFADSVPSTPAYNPGKSSYAFADSVPSTPG YNPGKSPFSFADSVPSTPAYNFGNSPRRFSEGSEDHSFDSFSRFDSFNMQDGGLFQSPRHSLSRFDSIRSTKDSDQSYGFPSRFDSFREGGDSDQSHEFS RFDFLREPDQNHGFSRFDSFKESDQNHGISRFDSFKESDPGHGFSSSFSSFGESRDPDHGHGFSKMDSFNAHDSGFFQSSDNSSLARFDSVRGSKDSENH GFPSFDDAVPFGSSGPFKTSLESETPRGSSDNWRAF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21630			Calcium-binding EF hand family...		Potri.005G102200 [exp]	0	1
AT2G43160			ENTH/VHS family protein (.1.2....		Potri.002G231100 [exp]	2.23	0.8346
AT2G38440		ITB1, DIS3, SCA...	IRREGULAR TRICHOME BRANCH1, S...		Potri.016G129000 [exp]	6.55	0.6595
AT4G01290			unknown protein		Potri.014G089200 [exp]	10.24	0.7111
AT4G39140			RING/U-box superfamily protein...		Potri.004G158400 [exp]	19.18	0.6567
AT5G19390			Rho GTPase activation protein ...		Potri.009G069700 [exp]	20.88	0.7118
AT4G02570		AXR6, ATCUL1	AUXIN RESISTANT 6, cullin 1 (....		Potri.008G217300 [exp]	21.77	0.7105	Pt-CUL1.4
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	26.72	0.7124
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.010G255600 [exp]	27.54	0.6702
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	28.24	0.6923
AT3G59690		IQD13	IQ-domain 13 (.1)		Potri.019G095700 [exp]	30.62	0.7100

Compare expression of checked genes

Potri.005G102200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.