Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17525 754 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G64320 251 / 1e-73 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 248 / 3e-72 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G48810 237 / 4e-69 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74580 233 / 6e-67 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 218 / 2e-62 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G55840 221 / 3e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 216 / 9e-61 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20090 212 / 6e-60 EMB1025 embryo defective 1025, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 207 / 1e-58 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G015900 [exp] 275 / 1e-82 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 239 / 1e-69 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G013300 [exp] 235 / 2e-67 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G148700 [exp] 229 / 4e-66 AT3G48810 728 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 229 / 8e-66 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G105600 [exp] 228 / 6e-65 AT5G39710 1022 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G217600 [exp] 223 / 3e-63 AT2G16880 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.009G069600 [exp] 222 / 4e-63 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G034200 [exp] 220 / 4e-63 AT1G12700 511 / 6e-174 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035981 [exp] 749 / 0 AT2G17525 684 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016688 [exp] 733 / 0 AT2G17525 655 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 259 / 2e-76 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012328 [exp] 258 / 6e-76 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10039056 [exp] 256 / 4e-75 AT5G64320 832 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 237 / 2e-67 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10038974 [exp] 221 / 2e-62 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012068 [exp] 219 / 1e-60 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023863 [exp] 215 / 4e-60 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10036090 [exp] 214 / 2e-59 AT1G52620 755 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.005G102400.2 pacid=42804951 polypeptide=Potri.005G102400.2.p locus=Potri.005G102400 ID=Potri.005G102400.2.v4.1 annot-version=v4.1 ATGTACAAAATCTCAAACCTTTCGAACTTAGCAAACTCTCGCTTCCCCACAAGAACAAAAGCATCAAAATTACTAGTCATCTTCCAGGCCAAAAACATCT TCTTTTCCACATTTTCCTCTTCATCATCCACTACAACGCCAACTCCATCTCTTGCTGTCCCAACTCACGAACGAATTGTCCATCTCATTTTAGACCAAAA ATCAGCACCACAAGCTCTTCAAACCTTCGAATGGGCATCAAAGTTACCAAATTTCACACACTCTCAGTCCACATATCGAGCTTTAATCCACAAGTTGCTG ACTTTTCGTCGATTCCATACTGTTCAACATCTGCTCGATGAAATGCCTAAATCAATTGGCTTGCCCCCTGATGAATCGATTTTCCTCACAATCATTCGTG GGCTTGGAAGGGCTCGAATGATTCGTGATGTTATTAAAGTTCTTGACTTGGTAACTAGGTATGGCAAGAACCCATCTTTGAAAATTTTTAATTCAATACT TGATGTTCTTGTTAAGGAAGATATTGATTTGGCTAGGAAGTTTTATAGGAAAAAAATGATGGGTGCTGGCATTCAAGGTGATGACTACACCTACGGGATT TTAATGAAAGGGCTTTGCTTGACTAATAGAATTGGTGAGGGGTTTAAGCTGTTGCAAGTTATCAAGTCCAGGGGTTTAAAGCCTAATGTTGTTATTTATA ATACTTTACTCCATGCACTTTGTAACAATGGTAAAGTTGGGAGGGCAAGGAGCTTAATGAATGAGATAAAGGAGCCTAATGATGTGACTTTCAATGTGTT GATTTGTGGGTATTGTAAAGAAGATAATTTTGTTCAAGCTCTAGTGTTGTTAGAGAAGAGTTTTTCTTTGGGGTTTGTACCAGATGTCGTTACAGTGACT AAGGTGGTGGAGATTCTTTGCAATGTAGGTCGCGTGACAGAGGCTGTTGAGATATTAGAGAGAGTGGAGAGCAAAGGAGGTGTAGTTGATGTTGTAGCTC ATAACACCTTGATAAAGGGATTTTGCAAGTTTGGAAAGGTGAAACTTGGTCATGGTTTATTGAAGGAAATGGAGAGAAAGGGATGTCTTCCTAATGCAGA CACCTATAATGCATTGATCTCTGGTTTCTGTGAGTCAGGAATGTTGGAGTCAGCTCTTGATATGTTTAATGATATGAAAACAGATGGGATCAATTGTAAT TTTGTTACATTTGATACGTTAATCAAAGGTTTGTTTTCAAGAGGGAGGACTGAAGATGGATTTAAGATCTTAGAACTTATGGAAGAGACAAGAGGAGTTT GTGGGGGTAGCATTAGTCCTTATAACAGTGTTTTATATGGTCTTTACAGGAAAAATATGTTGAATGAAGCACTTGAGTTTCTAATGAAGATGGAGAATTT ATTTCCAAGAGCTGTTGATAGGAGCTTGAGGATATTAGGGTTTTGTGAGGAGGGTGCCATTCAGGAAGCTAAGAGGGTTTATGATCAAATGAATAATGAA GGTGGAATTCCAAGTGCTCTTGTCTATGACTGCCTAATCCATGGATTTTGCCAAGAAGGGTGTGTCCGAGAAGCATTAGAGCTGATGAATGAGATGGTTT TCCTTGGTTATTTTCCTGTTGCATCAACATTCAATGCTCTTATTAGTGGGTTTTGCAGGTTAGGGAAAGATGGGAGTGCTCTGAAGCTACTTGAGGACAT GGTTGGGAGAGGCTGCGTGCCCGATACAGGAAGTTATAGCCCTCTGATTGATGCTCTTTGTAGGAAGAAGAGTTTTCAAAAGGCTGCGAGTCTCCTCTTA CAAATGGTAGAAAATGGTATAACTCCTGATTATTTGATATGGAACTCTTTGTTTCATTGTCTCAGTCAACAAACTAACTGGTTAGAAAGCAATAATATGT TCCGTGTACACAACCTGGTAGAACAAATTGTTGAGATTTGA
AA sequence Show only first row Show all	>Potri.005G102400.2 pacid=42804951 polypeptide=Potri.005G102400.2.p locus=Potri.005G102400 ID=Potri.005G102400.2.v4.1 annot-version=v4.1 MYKISNLSNLANSRFPTRTKASKLLVIFQAKNIFFSTFSSSSSTTTPTPSLAVPTHERIVHLILDQKSAPQALQTFEWASKLPNFTHSQSTYRALIHKLL TFRRFHTVQHLLDEMPKSIGLPPDESIFLTIIRGLGRARMIRDVIKVLDLVTRYGKNPSLKIFNSILDVLVKEDIDLARKFYRKKMMGAGIQGDDYTYGI LMKGLCLTNRIGEGFKLLQVIKSRGLKPNVVIYNTLLHALCNNGKVGRARSLMNEIKEPNDVTFNVLICGYCKEDNFVQALVLLEKSFSLGFVPDVVTVT KVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIKGFCKFGKVKLGHGLLKEMERKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGINCN FVTFDTLIKGLFSRGRTEDGFKILELMEETRGVCGGSISPYNSVLYGLYRKNMLNEALEFLMKMENLFPRAVDRSLRILGFCEEGAIQEAKRVYDQMNNE GGIPSALVYDCLIHGFCQEGCVREALELMNEMVFLGYFPVASTFNALISGFCRLGKDGSALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLL QMVENGITPDYLIWNSLFHCLSQQTNWLESNNMFRVHNLVEQIVEI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17525			Pentatricopeptide repeat (PPR)...		Potri.005G102400 [exp]	0	1
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	3.60	0.9344
AT5G41270			unknown protein		Potri.003G127200 [exp]	4.89	0.8853
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.003G155600 [exp]	6.48	0.8843
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G244900 [exp]	8.24	0.9097
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	12.20	0.8205
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	12.32	0.8803
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	12.36	0.9090
AT3G25060			Tetratricopeptide repeat (TPR)...		Potri.002G245200 [exp]	13.49	0.8932
AT1G03540			Pentatricopeptide repeat (PPR-...		Potri.013G145000 [exp]	14.96	0.8998
AT5G52850			Pentatricopeptide repeat (PPR)...		Potri.004G071800 [exp]	15.00	0.8876

Compare expression of checked genes

Potri.005G102400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.