Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51480 1012 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 936 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 910 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT1G05200 894 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G17260 892 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT2G32390 832 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 723 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29120 450 / 3e-143 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT2G29100 448 / 1e-142 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 442 / 1e-140 ATGLR2.8 glutamate receptor 2.8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102700 [exp] 1117 / 0 AT3G51480 1169 / 0.0 glutamate receptor 3.6 (.1) Potri.005G253800 [exp] 999 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.002G007400 [exp] 992 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 971 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.002G230000 [exp] 925 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.014G152200 [exp] 909 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G229900 [exp] 816 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012600 [exp] 499 / 1e-161 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012900 [exp] 495 / 3e-160 AT2G29120 910 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035980 [exp] 1047 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10012245 [exp] 993 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 892 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 888 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10016031 [exp] 881 / 0 AT1G42540 1123 / 0.0 glutamate receptor 3.3 (.1) Lus10026553 [exp] 828 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 811 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 804 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 774 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 764 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.005G102600.1 pacid=42803028 polypeptide=Potri.005G102600.1.p locus=Potri.005G102600 ID=Potri.005G102600.1.v4.1 annot-version=v4.1 ATGGGGTTGTGCACCATCATGCATAAGGTTTTGTTTGTGGCTGTAATGGTTTTCAGCAATGGGTTATCATCAAATGGGATCGGTCTGAATGATACTGCAA GACCGAAGGTTGTCAAAATTGGGGCTCTTCTAAATTTTAATACTACCGTTGGAAAAGTTGCGAAGGTTGCAATAGAAGCTGCTGTTGAAGATGTGAATAA CAGTACTATCCTTGGTGAGACAAAGCTGCAAGTCACTATGCAGGACACAGAGAATAGCAGCTTTCTTGGCATGCTTGACGCTTTAAGCTTGATGGATGGT GAGACAGTGGCCATAATTGGGCCCGAGACTTCAGCTACTGCTCATGTTGTATCGCAAATCGCCGATGAGATTCATATCCCCATGTTGTCATTTGGAGCTA CAGACCCGACACTATCTTCACTTCAGTACCCATTCTTTGTCAGGACAACACAGAATGATCTATTTCAGATGGCAGCAATAGCAGAAATTATAGACTACTA TGGATGGAGAGATGTAACAGCAATCTATGTAGATGACGATCATGGGAGAAACGGAATTGCAGCTTTGGGAGACAAGTTGGCCGAGAGACGCTGTAGGATA TCACATAAAGCTCCTATAAGCCCCAGTCTGAGCCGTGAAAACATCCGCAATGAACTGAAAACGGCGAATTCGGAGGAATCTAGGATTTTTGTTCTTCTTG CTCATGCAGACTGGGGTCTGGAGGTTTTTAGGGTGGCGCAAGATATTGGGATGACAGGAAGTGGCTATGTCTGGCTAGTTACCGATTGGCTTGCTAGCAC CTTCGATACTAATTCTTCTATCTCTCCAGAAGCAATTGGTGGAGTGCAAGGAGCTATTACGTTGCGTATGCACACACCAGATTCACAACAGAAAACGAAA TTTGTCTCTGGATGGAGCAAATTGATCACTCGGGATAAAATGGTTAATGGCACTGGGTTAAATACTTATGGTCTATATGCTTATGACACTGTCTGGTTGC TGGCTTATGGAATTGATGCCTTTTTCAAGCAGGGAGGAAATATTTCATTTTCACAAGATCCAAAGGTAACCGAGCAGCATAGAGGGAAACTGAAGGTGGA TGAAGTGAGAATCTTCAATGGAGGGGATCTTTTGCTTCACATCATTTTACAGGTCAATACGACCGGAGTAGCAGGGCCAATCAAGTTCGATTCAGATAGG AACCTCATTCATCCGGCATATGAAGTTATGAACGTCAATGGCAAAGGGTTTAAAAGGATCGGTTATTGGTCTAATTACTCTGGCTTATCAGTTGTGCCAC CGGAAACGCTTTATACAAAGCCACCTAATCGTTCAAGTTTGAGTCAAGAACTAGAGAGTGTAATCTGGCCTGGACAAACGAAACAGAAGCCTCGTGGATG GGTTTTTCCAGAGAATGGAAGGCAATTGAGAATTGCAGTGCCAAACCATGTCATTTATCACGAGTTGGTCTCTGTGAAAGGCGCTGATTCATTCAGTGGA TACTGCATTGATGTATTTACAGCTGCTTTGAGCTCTTTGCCTTACGCTGTCCCATATAAGCTACATGCATTTGGGAATGGTATTAACAAACCTAAAATAT CTGAGCTTCTGCAATTGATCGAAGCCGATGTCTATGATGCTGCAGTAGGGGACTTGGCTATCACCAACAATCGAACGAGGATTGTGGATTTCACACAGCC CTACGTGGAGTCCGGCCTAGTCGTAGTGGCCCCAGTTCAGAAGTTGAACTCTAATTCTTTGGCATTCTTGAGGCCATTCACTCCGATGATGTGGTTAGTA ACGGGAATCTTTTTCCTTGTTGTCGGAGTTGTTGTTTGGATCTTGGAGCATAGAGTCAACGATGATTTTCGAGGCCCTCCTAAGAGACAAATTGCAACTA TTATATGGTTCAGCTTTTCAACATTGTTTTTCTCCCATAAGCAAAATACCGTCAGCTCCCTTGGTCGCTTTGTGCTACTCATCTGGCTATTCGTAGTTCT TATACTCAATTCAAGTTACACTGCAAGTTTGACCTCAATTCTTACGGTAGAACAACTTTCTTCGCCCATTAAAGGGATTGAGAGTTTGGTAACAAGCAAT GACCGCATAGGCTTCCAGCGGGGATCATTCGCTGAAAATTATCTAGCGGAGGAATACAACATAGCCAGGTCTAGACTTGTTGCTCTCAACTCCGACGAGG ACTATGCCAAAGCCTTGAAAGATGGTCCCCAGAAAGGAGGTGTTGCTGCGGTGATTGATGAACGAGCATACATAGAGCTTTTCCTCTCCACTCGATGTGA CTTCAGTATTGTAGGTCAGGAGTTCAGCAAAAGTGGGTGGGGATTTGCATTTCCGAGGGACTCACCCTTAGCAGTGGACATGTCAGCGGCCATCCTGAAA CTTTCAGAAGGCGGAGAACTCCAAAGAATACATGATAAATGGCTGCAGAGAAGTCCCTGTAGTTCAGAAGGTGCGAAAGAAAGTATAAACCGACTTCACC TAAAAAGCTTTTGGGGCCTTTTTCTCATGTGTGGTGTAGCTTGTTTGCTCGCTCTCCTTCTATATCTTATAAAGATACTGTGGAAGTTTTCCAATTACTC AGAAGACACCGAGCCTTCAAGTCGAGGCACTTCATCTCCAGGTCTTCAGACATTCTTTTCATTTGTCAGTGAAAAGGAAGCGGACATCACTAGTCGGTCC AAGAAAAGGCGAATGGAGAGGACCTCAAAGAAAGTTAGAGGTGGAGATGAATCACCAAACTGTTCTTTTGGGAATAGTAATGAAGTCTAG
AA sequence Show only first row Show all	>Potri.005G102600.1 pacid=42803028 polypeptide=Potri.005G102600.1.p locus=Potri.005G102600 ID=Potri.005G102600.1.v4.1 annot-version=v4.1 MGLCTIMHKVLFVAVMVFSNGLSSNGIGLNDTARPKVVKIGALLNFNTTVGKVAKVAIEAAVEDVNNSTILGETKLQVTMQDTENSSFLGMLDALSLMDG ETVAIIGPETSATAHVVSQIADEIHIPMLSFGATDPTLSSLQYPFFVRTTQNDLFQMAAIAEIIDYYGWRDVTAIYVDDDHGRNGIAALGDKLAERRCRI SHKAPISPSLSRENIRNELKTANSEESRIFVLLAHADWGLEVFRVAQDIGMTGSGYVWLVTDWLASTFDTNSSISPEAIGGVQGAITLRMHTPDSQQKTK FVSGWSKLITRDKMVNGTGLNTYGLYAYDTVWLLAYGIDAFFKQGGNISFSQDPKVTEQHRGKLKVDEVRIFNGGDLLLHIILQVNTTGVAGPIKFDSDR NLIHPAYEVMNVNGKGFKRIGYWSNYSGLSVVPPETLYTKPPNRSSLSQELESVIWPGQTKQKPRGWVFPENGRQLRIAVPNHVIYHELVSVKGADSFSG YCIDVFTAALSSLPYAVPYKLHAFGNGINKPKISELLQLIEADVYDAAVGDLAITNNRTRIVDFTQPYVESGLVVVAPVQKLNSNSLAFLRPFTPMMWLV TGIFFLVVGVVVWILEHRVNDDFRGPPKRQIATIIWFSFSTLFFSHKQNTVSSLGRFVLLIWLFVVLILNSSYTASLTSILTVEQLSSPIKGIESLVTSN DRIGFQRGSFAENYLAEEYNIARSRLVALNSDEDYAKALKDGPQKGGVAAVIDERAYIELFLSTRCDFSIVGQEFSKSGWGFAFPRDSPLAVDMSAAILK LSEGGELQRIHDKWLQRSPCSSEGAKESINRLHLKSFWGLFLMCGVACLLALLLYLIKILWKFSNYSEDTEPSSRGTSSPGLQTFFSFVSEKEADITSRS KKRRMERTSKKVRGGDESPNCSFGNSNEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102600 [exp]	0	1
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	9.38	0.7814
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Potri.013G125000 [exp]	12.36	0.7846	Pt-ATEP3.1
AT3G61850	DOF	DAG1, AtDof3,7	dof affecting germination 1, D...		Potri.014G100900 [exp]	13.71	0.8040	DAG1.2
AT3G28540			P-loop containing nucleoside t...		Potri.004G091250 [exp]	14.07	0.8016
					Potri.010G125900 [exp]	24.49	0.7499
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	25.51	0.7679
					Potri.001G042200 [exp]	29.18	0.7653
AT4G27950	AP2_ERF	CRF4	cytokinin response factor 4 (....		Potri.019G131300 [exp]	33.91	0.7469
AT5G07610			F-box family protein (.1)		Potri.005G043500 [exp]	34.72	0.7667
					Potri.012G121504 [exp]	34.89	0.7626

Compare expression of checked genes

Potri.005G102600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.