Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-GLR3.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51480 1169 / 0 ATGLR3.6 glutamate receptor 3.6 (.1) AT1G42540 1110 / 0 ATGLR3.3 glutamate receptor 3.3 (.1) AT4G35290 1025 / 0 ATGLUR2, ATGLR3.2, GLUR2 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) AT2G17260 1008 / 0 ATGLR3.1, ATGLR2, GLR2 glutamate receptor 2 (.1) AT1G05200 978 / 0 GLUR3, ATGLR3.4 glutamate receptor 3.4 (.1.2) AT2G32390 876 / 0 GLR6, ATGLR3.5 glutamate receptor 3.5 (.1.2.3) AT2G32400 762 / 0 ATGLR3.7, GLR5 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) AT2G29100 494 / 4e-160 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G29110 485 / 1e-156 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 457 / 3e-146 ATGLR2.2 glutamate receptor 2.2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G102600 [exp] 1142 / 0 AT3G51480 1012 / 0.0 glutamate receptor 3.6 (.1) Potri.005G253800 [exp] 1140 / 0 AT1G42540 1180 / 0.0 glutamate receptor 3.3 (.1) Potri.009G168300 [exp] 1123 / 0 AT4G35290 1127 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Potri.002G007400 [exp] 1115 / 0 AT1G42540 1178 / 0.0 glutamate receptor 3.3 (.1) Potri.002G230000 [exp] 994 / 0 AT1G05200 1198 / 0.0 glutamate receptor 3.4 (.1.2) Potri.014G152200 [exp] 974 / 0 AT1G05200 1210 / 0.0 glutamate receptor 3.4 (.1.2) Potri.002G229900 [exp] 877 / 0 AT2G32400 955 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Potri.018G012100 [exp] 520 / 1e-169 AT2G29120 934 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.018G012600 [exp] 519 / 3e-169 AT2G29120 946 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035980 [exp] 1264 / 0 AT3G51480 1149 / 0.0 glutamate receptor 3.6 (.1) Lus10012245 [exp] 1131 / 0 AT1G42540 1258 / 0.0 glutamate receptor 3.3 (.1) Lus10027171 [exp] 976 / 0 AT1G05200 1243 / 0.0 glutamate receptor 3.4 (.1.2) Lus10039671 [exp] 972 / 0 AT1G05200 1239 / 0.0 glutamate receptor 3.4 (.1.2) Lus10026553 [exp] 955 / 0 AT4G35290 1035 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10026552 [exp] 929 / 0 AT4G35290 1025 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10013837 [exp] 918 / 0 AT4G35290 1016 / 0.0 GLUTAMATE RECEPTOR 3.2, glutamate receptor 2 (.1.2) Lus10039672 [exp] 854 / 0 AT2G32400 969 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10031560 [exp] 847 / 0 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1) Lus10027170 [exp] 835 / 0 AT2G32400 970 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF00060 [poplar] [flax] Lig_chan Ligand-gated ion channel CL0177 [poplar] [flax] PBP PF00497 [poplar] [flax] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0144 [poplar] [flax] Periplas_BP PF13458 [poplar] [flax] Peripla_BP_6 Periplasmic binding protein
Representative CDS sequence Show only first row Show all	>Potri.005G102700.3 pacid=42804092 polypeptide=Potri.005G102700.3.p locus=Potri.005G102700 ID=Potri.005G102700.3.v4.1 annot-version=v4.1 ATGAAGTTAATTTGGGTTCTGGTGTTGGTGGTATGCTACAATGGGGTTTGCCTAAATGGAGTTACTACAAATGTAACTACAAGACCTCCTTTTGTGAACA TTGGAGCTCTTTTGTCATACAATTCTACCATTGGAAAAGTTGCAAAAGTTGCAATACAAGCTGCAGTTGATGACGTGAATTCTGACCCATCTGTTCTTGG TGGAACTAAGCTAAGGCTTCAGATGCAGAATACTAATAACAGTGGATTTCTTGGCATTGTTGAGTCTTTGAAGTTCATGGAAACTGATACTGTGGCCATA ATTGGTCCCCAGTCTTCAGTGACAGCTCATGTAATATCTTTTGTAGCAAATGAGCTCCAAGTCCCTTTATTATCATATTCATCCACAGATCCTACTCTTT CTTCACTTCAGTTCCCATACTTTATCATGACCTCCCGGAATGACCTGTATCAGATGGCTGCTATAGCTGAAATTGTCGACTATTATGGATGGAGAGAGGT GATAGCAATTTATGGGGATGATGATTATGGGAGAAATGGGATAGCTGCATTAAGTGATAAACTTGCAGAGAGACGATGTAAAATCTCATATAAAGCACCT CTGACCCCTACAGCAACCCAGCAGGAGATCACTGATCTGCTAGTTGAGGTGGCTTTAACCGAGTCCCGGATTCTTGTTGTTCATACTTTTTCCAGTTGGG GTCCAGTTGTATTCAGTGTTGCTCAACATCTTGGCATGATGGGACCTGGATATGTGTGGATTGCTACTAATTGGCTCTCCACTCTCTTAGAAACCGATTA TCTCTCATCAGATACATTGGATGATATTCAAGGAGTTCTTACATTGCGTATGTACACTCCAGATTCAGAACTCAAAAGGAAGTTTAGATCTAGGTGGAGC AACTTGACTAGAGGGACAACAGGTTATGGCCTTAATCCAATAGGTCTGAGTACCTATGGTCTATATGCTTATGACACAGTATGGTTACTTGCTCGTGCAA TCAATGCTTTTTTAGATCAAGGAGGCAACATTTCATTTTCAACTGAATCAAGACTAGCTAAGCTACGCGAAGGGAGTTTGCATCTTGATGCCATGAACAT TTTCAATGGAGGAGAGCTGTTACGTGAAAACATTTTGCAGGCTAACATGACTGGCGTGACAGGCCAACTCAAGTTTAATCCTGATGGGAATCTCATTAAT CCTGCTTATGAAGTCATCAATGTGATTGGCAATGGGATCAGAAAGATTGGTTATTGGACTAATTATTCTGGTTTATCTGTCGTGCCTCCTGGAACTCTTT ACTCAAACCCTCCTAATCGTTCCAGCTCTAGTCAAAATTTATACAGTGTTCTTTGGCCTGGCCAAACAGCACAGAAGCCTCGTGGGTGGGTTTTCCCAAA CAATGGAAGACATTTGAGAATCGGTGTCCCAAATCGCGTTAGTTATCGTGATTTTGTCTCTCAAGTACCAGGCACTGATATGTTTACTGGGTACTGCATT GATGTTTTTACTGCTGCTATCAACTTGTTGCCATATGCTGTCCCATATAAATTAATTCCATATGGAGATGGAATTAATAACCCAAGTTGCACTGAGCTTG TACGTTTGATCACAGCGGGTGTCTATGATGCAGCAATAGGTGATATTGCAATCATCACAAACAGAACGAGGATGGCCGACTTTACACAGCCATATATCGA GTCTGGGCTAGTTGTAGTAGCTCCTGTTAAAAAAATGAATTCTAGTGCTTGGTCATTTCTGAAGCCATTTACTCGACAGATGTGGGGGGTTACAGCACTC TTTTTCATCATTGTGGGTGCAGTTGTTTGGATTTTGGAGCATAGGTTGAATGATGATTTCAGAGGTCCTCCTAGAAGACAACTGATTACTATTCTATGGT TTAGCTTTTCAACTTGGTTCTTTGCCCACAGAGAAAATACCATCAGCACTCTTGGTCGCTTTGTATTAATTATATGGCTATTTGTGGTTCTTATAATTAA CTCAAGCTACACAGCAAGCTTGACCTCAATTCTTACAGTTCAGCAGCTTACTTCTCCTATTAAAGGCATTGATAGTTTAATATCAAGCAAAGATCCAATT GGTTACCAGCAGGGATCATTTACCCGAGACTATCTAATTAATGAACTTGGCATTCACAAATCCAGGCTCATTTCACTTAAGATGCCAGAAGACTATGCTA AAGCCTTGAAAGATGGTCCTCATAAGGGTGGTGTGGCTGCCGTGGTTGATGAGCGCGCGTACCTAGAGCTCTTCCTCTCAAATCAATGTGAATTCAGTAT CGTGGGTCGAGAGTTCACTAAGAATGGATGGGGATTTGCATTTCCAAGAGACTCGCCTTTAGCAGTAGATTTGTCAACTGCCATTCTGAAACTATCAGAG AATGGGGATCTGCAAAGGATCCATGACAAATGGCTTATGAGAAGTGCATGTAGTTCACAAGGCGCAAAGTTTGAAGTGGACAGGCTTGACCTAAGAAGCT TCTGGGGCCTATATTTGATATGTGGAATAGCTTGCTTGCTTGCTCTCTTCTTATATTTTCTGAAGATGGTGCGGCAGTTCAGTCGGCACTACTCATCGGA GTTAGATTCTTCTGGTCGAGGCTCAACATCTGCACGTCTTCAAACATTTCTTTCATTTGTTGACGAAAAGGAACAGGAAGTGAAAAGCCGCTCCAAGAGA AGGCAACTGGAAATGGCCTCTAATCGAAATGAATCCATGGACAATTACAGCTCCAAGAGACGACACATTGAGTCGCCTCCAGATGGAAGTCCACAAGCTA GTAACGAGGCCTAA
AA sequence Show only first row Show all	>Potri.005G102700.3 pacid=42804092 polypeptide=Potri.005G102700.3.p locus=Potri.005G102700 ID=Potri.005G102700.3.v4.1 annot-version=v4.1 MKLIWVLVLVVCYNGVCLNGVTTNVTTRPPFVNIGALLSYNSTIGKVAKVAIQAAVDDVNSDPSVLGGTKLRLQMQNTNNSGFLGIVESLKFMETDTVAI IGPQSSVTAHVISFVANELQVPLLSYSSTDPTLSSLQFPYFIMTSRNDLYQMAAIAEIVDYYGWREVIAIYGDDDYGRNGIAALSDKLAERRCKISYKAP LTPTATQQEITDLLVEVALTESRILVVHTFSSWGPVVFSVAQHLGMMGPGYVWIATNWLSTLLETDYLSSDTLDDIQGVLTLRMYTPDSELKRKFRSRWS NLTRGTTGYGLNPIGLSTYGLYAYDTVWLLARAINAFLDQGGNISFSTESRLAKLREGSLHLDAMNIFNGGELLRENILQANMTGVTGQLKFNPDGNLIN PAYEVINVIGNGIRKIGYWTNYSGLSVVPPGTLYSNPPNRSSSSQNLYSVLWPGQTAQKPRGWVFPNNGRHLRIGVPNRVSYRDFVSQVPGTDMFTGYCI DVFTAAINLLPYAVPYKLIPYGDGINNPSCTELVRLITAGVYDAAIGDIAIITNRTRMADFTQPYIESGLVVVAPVKKMNSSAWSFLKPFTRQMWGVTAL FFIIVGAVVWILEHRLNDDFRGPPRRQLITILWFSFSTWFFAHRENTISTLGRFVLIIWLFVVLIINSSYTASLTSILTVQQLTSPIKGIDSLISSKDPI GYQQGSFTRDYLINELGIHKSRLISLKMPEDYAKALKDGPHKGGVAAVVDERAYLELFLSNQCEFSIVGREFTKNGWGFAFPRDSPLAVDLSTAILKLSE NGDLQRIHDKWLMRSACSSQGAKFEVDRLDLRSFWGLYLICGIACLLALFLYFLKMVRQFSRHYSSELDSSGRGSTSARLQTFLSFVDEKEQEVKSRSKR RQLEMASNRNESMDNYSSKRRHIESPPDGSPQASNEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Potri.005G102700 [exp]	0	1	Pt-GLR3.5
AT3G10840			alpha/beta-Hydrolases superfam...		Potri.013G092900 [exp]	2.64	0.9362
AT5G36160			Tyrosine transaminase family p...		Potri.017G013800 [exp]	10.48	0.9181
AT2G43945			unknown protein		Potri.013G084300 [exp]	10.67	0.9217
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G057800 [exp]	13.56	0.9215
AT1G18265			Protein of unknown function, D...		Potri.009G078800 [exp]	15.09	0.9096
AT5G14740		BETACA2, CA18, ...	CARBONIC ANHYDRASE 18, BETA CA...		Potri.010G041100 [exp]	16.43	0.8882
AT1G52190			Major facilitator superfamily ...		Potri.018G040301 [exp]	18.33	0.9117
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	18.73	0.9131
AT2G36990		SIG6, SIGF, ATS...	SIGMA FACTOR 6, RNApolymerase ...		Potri.006G125700 [exp]	18.97	0.9262	SIGF.1
AT1G60230			Radical SAM superfamily protei...		Potri.010G040700 [exp]	19.94	0.9312

Compare expression of checked genes

Potri.005G102700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.