Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38380 547 / 0 MATE efflux family protein (.1) AT2G38330 386 / 2e-128 MATE efflux family protein (.1) AT1G51340 321 / 2e-103 MATE efflux family protein (.1.2) AT3G08040 310 / 4e-99 ATFRD3, MAN1, FRD3 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) AT2G21340 79 / 3e-15 MATE efflux family protein (.1.2) AT4G39030 56 / 4e-08 SCORD3, SID1, EDS5 SALICYLIC ACID INDUCTION DEFICIENT 1, susceptible to coronatine-deficient Pst DC3000 3, ENHANCED DISEASE SUSCEPTIBILITY 5, MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183600 [exp] 620 / 0 AT4G38380 604 / 0.0 MATE efflux family protein (.1) Potri.009G143400 [exp] 619 / 0 AT4G38380 626 / 0.0 MATE efflux family protein (.1) Potri.016G126000 [exp] 402 / 5e-134 AT2G38330 499 / 9e-173 MATE efflux family protein (.1) Potri.009G053700 [exp] 320 / 7e-103 AT1G51340 634 / 0.0 MATE efflux family protein (.1.2) Potri.001G266900 [exp] 320 / 1e-102 AT3G08040 598 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.016G053600 [exp] 318 / 5e-102 AT1G51340 543 / 0.0 MATE efflux family protein (.1.2) Potri.009G061100 [exp] 277 / 4e-86 AT3G08040 566 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Potri.009G122900 [exp] 77 / 1e-14 AT2G21340 684 / 0.0 MATE efflux family protein (.1.2) Potri.009G122600 [exp] 71 / 1e-12 AT2G21340 646 / 0.0 MATE efflux family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023943 [exp] 547 / 0 AT4G38380 593 / 0.0 MATE efflux family protein (.1) Lus10014440 [exp] 504 / 2e-174 AT4G38380 527 / 0.0 MATE efflux family protein (.1) Lus10026829 [exp] 479 / 3e-164 AT4G38380 535 / 0.0 MATE efflux family protein (.1) Lus10014441 [exp] 462 / 2e-152 AT4G38380 501 / 2e-167 MATE efflux family protein (.1) Lus10012227 [exp] 404 / 2e-134 AT2G38330 608 / 0.0 MATE efflux family protein (.1) Lus10039609 [exp] 305 / 5e-97 AT3G08040 619 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10002856 [exp] 303 / 9e-97 AT2G38330 477 / 2e-165 MATE efflux family protein (.1) Lus10026303 [exp] 302 / 6e-96 AT1G51340 564 / 0.0 MATE efflux family protein (.1.2) Lus10029517 [exp] 299 / 3e-93 AT3G08040 596 / 0.0 MANGANESE ACCUMULATOR 1, FERRIC REDUCTASE DEFECTIVE 3, MATE efflux family protein (.1.2) Lus10042365 [exp] 293 / 2e-92 AT1G51340 571 / 0.0 MATE efflux family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.005G102800.2 pacid=42804863 polypeptide=Potri.005G102800.2.p locus=Potri.005G102800 ID=Potri.005G102800.2.v4.1 annot-version=v4.1 ATGACTGTTACTCAACTTAGAGGTTTACCCTTTTATGGAGTCACTGGTAAAAGACGTGAAAGAAGAGTGAATAAAAGGGGTGAAGCTTTTACATTAAAAG ATGAAATAAAAGTTCCTCATCTTTGTCATTTTGTCGTGAGCAATAAGAGGGGACTGAGATTCAACACTTTCACCAAGTGTTGTGGGTCAATCTTTGATCG GCAAACTTCAGAATATAGCTTGAATCTTTCGAGTGTCGAGGAGAGATTGGCTTCAAACAATGGGAGATCTGTAAGCAAGGGAATCTATGACTCAACAGGG CCACCAATAGCCAGTCAATCACGCACGCCTAGTGTCCAAAATGAACTCATAATGCTTTCTATACCAGCAATTGCTGGACAAGCAATTGAACCTTTAGCAC AACTCATGGAAACAGCTTATGTCGGTAGATTGGGTCCTTTGGAGTTAGCAACAGCAGGAGTTTCCATGTCGATATTCAATATCCTATCAAAGGTTTTTAA TATACCTCTCCTCAGTGTAGCAACTTCATTTGTGGCTGAAGACATCTCAAGGAATGCTAGCAAGTCTACTTCAGGTCATCTCCACCCTGAAGATGAAATG GCTGAAAGAAAGTCACTGTCTTCTGTCTCTACGGCTTTAGTCTTAGCAGCTGGAATTGGTGTATTTGAGGCTTTGGCTATGTATCTAGGATCCGGAATAT TTCTCAATATGATGGGCATACCACCTGCTTCACCAATGCGCATCCCAGCAGAAAGATTTCTCAAACTCAGGGCAATTGGTGCTCCAGCAGTTGTAGTTTA TCTGGCCATTCAGGGCATTTTTCGTGGGTTTAAGGACACTAAGACTCCTGTCCTGTGTCTAGGGTTTGGCAATTTTTCAGCTGTACTCTTGTTCCCCTTG CTGATGAACTATTTTGGCTTGGGTGTAACTGGCGCTGCCATCTCAACCGTTGTGTCTCAATACGTTGTTGCCCTTCTCATGATCTGGTATCTTAACAAAA AGACAATTTTGTCCCTTCCGAATGTCCAAAGCTTGGATTGTGGTGGCTACCTCAGCTCTGGTGGTTTTCTTCTTGGGAGAACTTTAGCTGCTGTCATGAC CATAACTTTGAGCACATCAATGGCTGCTCGTCAAGGAGCACTACCAATGGCAGCTCATCAAATATGTTTACAAGTGTGGCTATCAGTTTCACTTCTTGCA GATGCTCAAGCTGCATCTGGTCAGGCCCTTATTGCAAGCTCTTCTGCAAAAGGTGACTACAGCACTGTGAAAGAAATTACATTCTCTGCTTTGAAGATTG GATTGATTACTGGCATTTCCTTAGCAATCATATTGGGTGTGTCATTTAGTTCTATAGCAACTATGTTCACTAAAGACGCAGAGGTACTAGCGATAGTCAG ATCTGGGCTGCTGTTTGTGAGTGCTAGTCAACCTATCAATGCGCTTGCTTACATATTTGACGGCCTGCATTATGGCATATCTGATTTTTCATATGCTGCA TGGTCTATGATGATGGTTGGGGCAATTTCTTCTGCATTTATTCTCTACGCACCCTCAACCGTTGGTCTCTATGGAGTTTGGTCTGGACTAACTCTTTTCA TGGGCTTGCGGACAGTCGCCGGATATATGAGATTAATCTCCAAAAATGGGCCATGGTGGTTCCTGCACGAGGACATCCCTAAAAATTGGAGACTGGACGA GGCTTAG
AA sequence Show only first row Show all	>Potri.005G102800.2 pacid=42804863 polypeptide=Potri.005G102800.2.p locus=Potri.005G102800 ID=Potri.005G102800.2.v4.1 annot-version=v4.1 MTVTQLRGLPFYGVTGKRRERRVNKRGEAFTLKDEIKVPHLCHFVVSNKRGLRFNTFTKCCGSIFDRQTSEYSLNLSSVEERLASNNGRSVSKGIYDSTG PPIASQSRTPSVQNELIMLSIPAIAGQAIEPLAQLMETAYVGRLGPLELATAGVSMSIFNILSKVFNIPLLSVATSFVAEDISRNASKSTSGHLHPEDEM AERKSLSSVSTALVLAAGIGVFEALAMYLGSGIFLNMMGIPPASPMRIPAERFLKLRAIGAPAVVVYLAIQGIFRGFKDTKTPVLCLGFGNFSAVLLFPL LMNYFGLGVTGAAISTVVSQYVVALLMIWYLNKKTILSLPNVQSLDCGGYLSSGGFLLGRTLAAVMTITLSTSMAARQGALPMAAHQICLQVWLSVSLLA DAQAASGQALIASSSAKGDYSTVKEITFSALKIGLITGISLAIILGVSFSSIATMFTKDAEVLAIVRSGLLFVSASQPINALAYIFDGLHYGISDFSYAA WSMMMVGAISSAFILYAPSTVGLYGVWSGLTLFMGLRTVAGYMRLISKNGPWWFLHEDIPKNWRLDEA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38380			MATE efflux family protein (.1...		Potri.005G102800 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.006G116900 [exp]	4.00	0.9017
AT5G46290		KAS1, KAS I, KA...	KETOACYL-ACP SYNTHASE 1, 3-ket...		Potri.003G142000 [exp]	8.77	0.8722
AT1G64390		ATGH9C2	glycosyl hydrolase 9C2 (.1)		Potri.001G092200 [exp]	9.43	0.9052
AT1G70230		AXY4, TBL27	ALTERED XYLOGLUCAN 4, TRICHOME...		Potri.008G146100 [exp]	12.64	0.8642
AT3G17640			Leucine-rich repeat (LRR) fami...		Potri.004G001000 [exp]	13.96	0.8656
AT3G24240			Leucine-rich repeat receptor-l...		Potri.005G117700 [exp]	18.33	0.8454
AT4G39980		DHS1	3-deoxy-D-arabino-heptulosonat...		Potri.007G095700 [exp]	20.49	0.8274
AT3G48460			GDSL-like Lipase/Acylhydrolase...		Potri.012G093400 [exp]	21.44	0.8458
AT4G31590		ATCSLC5, ATCSLC...	CELLULOSE-SYNTHASE LIKE C5, Ce...		Potri.018G009300 [exp]	22.31	0.8763
AT1G03440			Leucine-rich repeat (LRR) fami...		Potri.014G136100 [exp]	25.92	0.8255

Compare expression of checked genes

Potri.005G102800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.