Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20560 608 / 0 AAE1 acyl activating enzyme 1 (.1.2) AT2G17650 568 / 0 AMP-dependent synthetase and ligase family protein (.1) AT1G66120 491 / 4e-169 AMP-dependent synthetase and ligase family protein (.1) AT1G76290 473 / 3e-162 AMP-dependent synthetase and ligase family protein (.1) AT3G16910 468 / 9e-160 AAE7, ACN1 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) AT5G16340 463 / 3e-158 AMP-dependent synthetase and ligase family protein (.1) AT5G16370 461 / 2e-157 AAE5 acyl activating enzyme 5 (.1) AT1G65880 460 / 1e-156 BZO1 benzoyloxyglucosinolate 1 (.1) AT1G65890 452 / 1e-153 AAE12 acyl activating enzyme 12 (.1) AT1G21540 450 / 2e-153 AMP-dependent synthetase and ligase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059401 [exp] 932 / 0 AT1G20560 594 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G250700 [exp] 628 / 0 AT1G20560 790 / 0.0 acyl activating enzyme 1 (.1.2) Potri.002G010600 [exp] 612 / 0 AT1G20560 823 / 0.0 acyl activating enzyme 1 (.1.2) Potri.005G099500 [exp] 591 / 0 AT2G17650 800 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.016G034800 [exp] 472 / 2e-161 AT1G66120 692 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.004G082000 [exp] 471 / 4e-161 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138451 [exp] 467 / 6e-160 AT1G65880 730 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.017G138350 [exp] 468 / 7e-160 AT1G65880 724 / 0.0 benzoyloxyglucosinolate 1 (.1) Potri.006G036200 [exp] 468 / 9e-160 AT1G66120 668 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028375 [exp] 603 / 0 AT2G17650 793 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016011 [exp] 587 / 0 AT1G20560 846 / 0.0 acyl activating enzyme 1 (.1.2) Lus10037734 [exp] 483 / 5e-166 AT3G16910 897 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10016869 [exp] 482 / 3e-165 AT3G16910 902 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10037735 [exp] 481 / 6e-165 AT3G16910 909 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10007369 [exp] 480 / 5e-164 AT1G65890 724 / 0.0 acyl activating enzyme 12 (.1) Lus10016870 [exp] 477 / 1e-163 AT3G16910 918 / 0.0 ACETATE NON-UTILIZING 1, acyl-activating enzyme 7 (.1) Lus10012266 [exp] 475 / 1e-163 AT5G16370 733 / 0.0 acyl activating enzyme 5 (.1) Lus10020787 [exp] 466 / 8e-159 AT1G65890 727 / 0.0 acyl activating enzyme 12 (.1) Lus10010956 [exp] 464 / 2e-158 AT1G65890 696 / 0.0 acyl activating enzyme 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF00501 [poplar] [flax] AMP-binding AMP-binding enzyme CL0531 [poplar] [flax] AMP-binding_C PF13193 [poplar] [flax] AMP-binding_C AMP-binding enzyme C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.005G102901.1 pacid=42802330 polypeptide=Potri.005G102901.1.p locus=Potri.005G102901 ID=Potri.005G102901.1.v4.1 annot-version=v4.1 ATGGAGGGAATTTATCACTGCCCTGCAAACTACGTGCCCTTGTCACCAATAAGTTTCCTAGAGAGAGCTGCTACGGTTTATGGAGATAAAGTTTCCATTG TGTATGGCAGTAATGTCAGGTTTTCATGGAAAGATACATTTGACAGATGTGTCAAGGTTGCTTCTGCTTTAGTTCAGTTGAAGATTTGCCCAGGTGATAT TGTTGTAGCTTTTGCCCCTAATGTTCCGGCACTTTATGAATTACATTTTGGTGTTCCGATGGCTGGGGCAGTTATTTCTGCGCTTAACACCAGGTTAGAT GCATCCACATTGGCTTTGGCATTAGAACAACTGGAGGCCAAACTCATTTTTGTGGATTACCAGTTCACTGATGTTGTGCTTAAGGCACTGGACCTCCTCT CTCAGAAAAAAGTCAACCCACCCCACCTTGTGGTAATCCCCGAGTGTGACAAATCTTCTTCAATGGACCGCAAACACATTGCCAGTGACCTGGATTACAA TTGTCTTCTTGAAATGGGGAGAGATGATTTTAGGATAATCCGACCGAACAACGAATGTGATCCGATTTCAGTGAATTACACTTCAGGTTCAACTGGAAAA CCTAAAGGAGTGGTATACAGTCACAGAGCTGCCTATCTCAACTCCTTGGCTGAGATATTCAGATTTGACATGAGACAAATGCCAGTGTTTCTATGGACAG TGGACATGTTTCGATGCAATGGATGGTGCCTTACTTGGGCAATGGCTGCCCTTGGTGGTACCAATATCTGCCTCAGAAATGTCTCGGCAGATATCATATT CGATGCCGTATCTCTTCACAAGGTAACTCACTTCTGCGGTCCACCAGCTATTTTGAACACCATTGCAAATGCACCAGCTAGAGCTAGTTCCCAAAGTCCA TTTTCGTGCAGTGTTAATGTTGTTGTGGCCGGATCATTGCCAAATTCAGAGATTCTCACCAAGGTTGAAGGTTTGGGATTTAATGTGTATCATGGTTACG GCATGACAGAAGCTCTTGGTCCAGCAACTATTAGGCCATGGAAACCTGAATCGGATTCTACGTTTGAAATTGAACAAGAAGAAATCAGGAGGCGTGAAGG ACTCCACAACCTTTTACTTGAAGGGGTTGATGTAAAGGATCCAAAGACCATGGAAAGCGTACCGAATGATGGGAAAACCATTGGTGAAGTGATGTTTAGA GGCAACATTTTGATGTCAGGGTACCTGAAAAGTACAGAAATTACTCAAGAAACCTTAAAGGGTGGGTGGTTTCATACAGGAGACCTTGGAGTAAGGCATC CGAATGGTTACTTACAAATGAAGGACCGAGCTAAGGATATTATCATCTCAGGGGGAGAGGCTATAAGCACATTAGAGGTGGAAGCAGTATTGTTAAGTCA TCCAAAGGTTTCAGAGGCTGCCGTTGTTGGACAGCCTGATGCTCTTTTGAATGAGGTGCCATGTGCATTTGTGAAATTGAAGGAAGGTTTTGGTGCTAGT GCTGAAGAGATTATTGAGTTCTGTGGTGATCAATTGCCAGACCTTATGATTCCAAGAACTATAGTGTTCGGGGAATTACCAGTCAATTTCTCTGGAAAGG TGCAAAAATTTGCTATGAGGGAGACGGTCAATGCCAACACCAGCCTTGCCAATTGTTGA
AA sequence Show only first row Show all	>Potri.005G102901.1 pacid=42802330 polypeptide=Potri.005G102901.1.p locus=Potri.005G102901 ID=Potri.005G102901.1.v4.1 annot-version=v4.1 MEGIYHCPANYVPLSPISFLERAATVYGDKVSIVYGSNVRFSWKDTFDRCVKVASALVQLKICPGDIVVAFAPNVPALYELHFGVPMAGAVISALNTRLD ASTLALALEQLEAKLIFVDYQFTDVVLKALDLLSQKKVNPPHLVVIPECDKSSSMDRKHIASDLDYNCLLEMGRDDFRIIRPNNECDPISVNYTSGSTGK PKGVVYSHRAAYLNSLAEIFRFDMRQMPVFLWTVDMFRCNGWCLTWAMAALGGTNICLRNVSADIIFDAVSLHKVTHFCGPPAILNTIANAPARASSQSP FSCSVNVVVAGSLPNSEILTKVEGLGFNVYHGYGMTEALGPATIRPWKPESDSTFEIEQEEIRRREGLHNLLLEGVDVKDPKTMESVPNDGKTIGEVMFR GNILMSGYLKSTEITQETLKGGWFHTGDLGVRHPNGYLQMKDRAKDIIISGGEAISTLEVEAVLLSHPKVSEAAVVGQPDALLNEVPCAFVKLKEGFGAS AEEIIEFCGDQLPDLMIPRTIVFGELPVNFSGKVQKFAMRETVNANTSLANC

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G20560		AAE1	acyl activating enzyme 1 (.1.2...		Potri.005G102901 [exp]	0	1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.009G022800 [exp]	3.16	0.9474
AT1G08630		THA1	threonine aldolase 1 (.1.2.3.4...		Potri.013G046400 [exp]	6.85	0.8929
AT2G15490		UGT73B4	UDP-glycosyltransferase 73B4 (...		Potri.018G008900 [exp]	7.61	0.9322
AT4G35160			O-methyltransferase family pro...		Potri.009G139800 [exp]	9.38	0.9239
AT4G05120		FUR1, ENT3, FLU...	FUDR RESISTANT 1, EQUILIBRATIV...		Potri.004G032400 [exp]	9.48	0.9291
AT2G45560		CYP76C1	"cytochrome P450, family 76, s...		Potri.012G136800 [exp]	9.48	0.9279
AT3G48270		CYP71A26	"cytochrome P450, family 71, s...		Potri.015G085600 [exp]	10.24	0.9322
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.007G090100 [exp]	12.96	0.9309
AT1G22360		ATUGT85A2, AT2	UDP-glucosyl transferase 85A2 ...		Potri.016G022000 [exp]	14.49	0.9242
AT2G29060	GRAS		GRAS family transcription fact...		Potri.009G033100 [exp]	16.73	0.9033

Compare expression of checked genes

Potri.005G102901 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.