Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17040 250 / 3e-83 NAC ANAC036 NAC domain containing protein 36 (.1) AT2G02450 162 / 1e-47 NAC LOV1, ANAC034, ANAC035 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) AT5G39820 148 / 1e-42 NAC ANAC094 NAC domain containing protein 94 (.1) AT5G61430 141 / 5e-40 NAC ANAC100, ATNAC5 NAC domain containing protein 100 (.1) AT1G01720 139 / 9e-40 NAC ATAF1, ANAC002 Arabidopsis NAC domain containing protein 2, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT5G07680 138 / 4e-39 NAC ANAC079, ATNAC4, ANAC080 Arabidopsis NAC domain containing protein 79, NAC domain containing protein 80 (.1.2) AT3G10480 139 / 1e-38 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G15170 136 / 2e-38 NAC ATNAC1, CUC1, ANAC054 CUP-SHAPED COTYLEDON1, Arabidopsis NAC domain containing protein 54, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) AT3G18400 135 / 5e-38 NAC ANAC058 NAC domain containing protein 58 (.1) AT2G43000 134 / 5e-38 NAC ANAC042, JUB1, JUNGBRUNNEN1 NAC domain containing protein 42 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G141600 [exp] 252 / 6e-84 AT2G17040 314 / 6e-108 NAC domain containing protein 36 (.1) Potri.003G046700 [exp] 160 / 1e-46 AT2G02450 318 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.004G230800 [exp] 157 / 8e-46 AT2G02450 311 / 2e-103 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Potri.005G255900 [exp] 145 / 3e-41 AT1G76420 295 / 4e-98 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.002G005800 [exp] 145 / 4e-41 AT1G76420 326 / 7e-110 CUP SHAPED COTYLEDON3, Arabidopsis NAC domain containing protein 31, NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (.1) Potri.019G031600 [exp] 142 / 9e-40 AT5G18270 328 / 6e-111 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.006G277000 [exp] 140 / 1e-39 AT2G24430 340 / 1e-116 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2) Potri.013G054200 [exp] 140 / 2e-39 AT5G18270 339 / 4e-115 Arabidopsis NAC domain containing protein 87 (.1.2) Potri.012G056300 [exp] 139 / 2e-39 AT3G18400 317 / 6e-108 NAC domain containing protein 58 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022636 [exp] 220 / 6e-71 AT2G17040 287 / 6e-97 NAC domain containing protein 36 (.1) Lus10003333 [exp] 214 / 7e-69 AT2G17040 293 / 2e-99 NAC domain containing protein 36 (.1) Lus10025118 [exp] 210 / 7e-67 AT2G17040 258 / 1e-85 NAC domain containing protein 36 (.1) Lus10023966 [exp] 203 / 4e-64 AT2G17040 268 / 3e-89 NAC domain containing protein 36 (.1) Lus10008419 [exp] 157 / 5e-45 AT2G02450 327 / 7e-109 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008420 [exp] 154 / 1e-44 AT2G02450 320 / 2e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10003367 [exp] 157 / 2e-44 AT2G02450 333 / 3e-110 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10023208 [exp] 153 / 2e-44 AT2G02450 321 / 3e-108 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10008897 [exp] 151 / 6e-44 AT2G02450 315 / 5e-106 LONG VEGETATIVE PHASE 1, Arabidopsis NAC domain containing protein 34, NAC domain containing protein 35 (.1.2) Lus10020165 [exp] 139 / 7e-39 AT2G24430 306 / 2e-102 Arabidopsis NAC domain containing protein 39, NAC domain containing protein 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [poplar] [flax] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Potri.005G103200.1 pacid=42803066 polypeptide=Potri.005G103200.1.p locus=Potri.005G103200 ID=Potri.005G103200.1.v4.1 annot-version=v4.1 ATGGAGTTTGATGGGCTCCCAGGTTTTCGATTCCACCCAACAGAAGAAGAACTCTTAGATTTCTACCTTACAAAGACTGTCTTAGGTCAAGACACAGCTG ATATCATTGGTTTCCTCAACATATACAATCACGAACCTTGGGACTTGCCAGGATTATCGAAGATAGGGGAGAGGGAGTGGTATTTCCTTGTGCACAGGGA GAGCGTTCTTGGGAGACCCAGGAGGACAACCGAGAAAGGTTACTGGAAGGCAACTGGTTCGGACAGGCCCATCCGATGCTTGATGGATCCGAAAAGGTTG TTGGGTCATAGAAAAACTATGGTTTTCTACAGAGGAAGAGCTCCACGAGGGAGCAAAACGGATTGGGTCATGAATGAGTACAGATTGCCTAGCAACTGCT ATTTATCGAAGGAGATTGTGCTTTGCAAAGTATATAGAAAGGCAACATCATTGAAGGTCTTGGAGCAAAGGGCAGCCATAGAAGAAATTGTTAGAGCACC TAACGTCACATCTTTATCTCCTCCAATGCAAGAGAATTTCTCTTTTTATGACCCCCAAAAGAGCTTCAACAAGTTCTTGTTAGAACAAAATAATGTTGTT CACAAAGTAGAGGGAGTGACAGTAATAGAAGAAGAAGAAGACAACAAAATTGGTTACCCATCCCAAATAATGGGAGTTGGACCCATCAAAGAGCACTTCT CCGAGCTCCTGTCACCAAAGTTAGTCCTGGATTGGACCATGGATTCACTTTGGCCTAACTAA
AA sequence Show only first row Show all	>Potri.005G103200.1 pacid=42803066 polypeptide=Potri.005G103200.1.p locus=Potri.005G103200 ID=Potri.005G103200.1.v4.1 annot-version=v4.1 MEFDGLPGFRFHPTEEELLDFYLTKTVLGQDTADIIGFLNIYNHEPWDLPGLSKIGEREWYFLVHRESVLGRPRRTTEKGYWKATGSDRPIRCLMDPKRL LGHRKTMVFYRGRAPRGSKTDWVMNEYRLPSNCYLSKEIVLCKVYRKATSLKVLEQRAAIEEIVRAPNVTSLSPPMQENFSFYDPQKSFNKFLLEQNNVV HKVEGVTVIEEEEDNKIGYPSQIMGVGPIKEHFSELLSPKLVLDWTMDSLWPN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17040	NAC	ANAC036	NAC domain containing protein ...		Potri.005G103200 [exp]	0	1
AT3G46400			Leucine-rich repeat protein ki...		Potri.012G002900 [exp]	1.00	0.9828
					Potri.019G110602 [exp]	1.41	0.9354
AT2G25410			RING/U-box superfamily protein...		Potri.001G154500 [exp]	2.44	0.9019
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G005600 [exp]	4.24	0.8903
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.005G085200 [exp]	4.47	0.8808	WRKY51.1
AT1G52600			Peptidase S24/S26A/S26B/S26C f...		Potri.006G274900 [exp]	5.00	0.8250
AT4G35840			RING/U-box superfamily protein...		Potri.005G244800 [exp]	5.29	0.8946
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Potri.009G083300 [exp]	5.74	0.8804
AT4G25000		AMY1, AMY3, ATA...	alpha-amylase-like (.1)		Potri.014G029400 [exp]	7.34	0.8596	AMYVM1.2
					Potri.001G078000 [exp]	9.48	0.8813

Compare expression of checked genes

Potri.005G103200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.