Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17670 528 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G12620 184 / 1e-51 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53700 183 / 1e-50 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 181 / 2e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62680 178 / 7e-50 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G63130 179 / 9e-50 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 179 / 3e-49 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62590 175 / 4e-48 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G63330 171 / 2e-47 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 171 / 6e-47 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G045000 [exp] 194 / 2e-55 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 190 / 6e-53 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046100 [exp] 188 / 7e-53 AT1G12700 512 / 1e-173 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271400 [exp] 187 / 7e-53 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G074500 [exp] 186 / 2e-52 AT1G62930 478 / 1e-162 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G242200 [exp] 186 / 2e-52 AT1G62930 472 / 4e-160 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G025600 [exp] 187 / 3e-52 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G257300 [exp] 184 / 2e-51 AT1G62930 481 / 3e-163 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G038300 [exp] 182 / 6e-51 AT1G12700 490 / 8e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041832 [exp] 575 / 0 AT2G17670 548 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10028379 [exp] 554 / 0 AT2G17670 545 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10009201 [exp] 175 / 1e-50 AT1G12700 274 / 3e-86 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10014245 [exp] 177 / 3e-49 AT1G12700 427 / 5e-141 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10038974 [exp] 174 / 1e-47 AT1G74580 911 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014244 [exp] 172 / 2e-47 AT1G12700 397 / 7e-130 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10012328 [exp] 171 / 2e-46 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10006373 [exp] 171 / 2e-46 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027916 [exp] 170 / 6e-46 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027914 [exp] 169 / 1e-45 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G103300.1 pacid=42803436 polypeptide=Potri.005G103300.1.p locus=Potri.005G103300 ID=Potri.005G103300.1.v4.1 annot-version=v4.1 ATGGGAAAATTCCCACCTTCATTCCGTTCTGCAATCTCATCGACATCACTCATCAAGAACACACCCTCTCAGCAGCAGCAACAACCCCATTACTTTCCCA AGAAACTCACCAAGAAAAATTCCCCAAAACCCCATGAAACTGAAACCCCACCACCTCACAAATCACTCTTTAAAACCTCATCTCTAAATGAAGCTAAAAG TCTCTTCAATTCCTTCATTTCAACTACAAAAGCCCCGCTACTAGACAACCTTCGTTTACACAACTCTTTCCTTCAATCCTACACTTCAATCTCCACCCTC GATGATTCCATTTCTCTTCTTGATCACATGGTCAAGACCCTCCCTTCCTTATCCCCTGACCGATCCACTTACCATGTTTTGCTTTCACAGTCTTGCAGAG AACCTGATAGTTCTCTATCTTCTGCTCAGAAAGTTTTGAACTTGATGATTAATAAGGGGTTTAAGCCTAATCAATTTACTGTTGATGTCGCGATTAGGTC TCTGTGCTCTGCTGGGAGAGTAGATGATGCTATTTTATTGGTAAAGGAATTTTCTTCGAAGCATTCAAAGCCTGATACTTTTACTTATAATTTTCTTGTT AAGTGTTTATGTAAGAGTAGGATTTTCAACAGTGTTTATAGTTTCATTGATGAAATGAAGAGTAGTTTTGATATAAAGCCTGATCTTGTTACTTATACCA TATTGATTGATAATGTTTGTAATGCAAAAAATATTCGTGAGGCTGATAGATTGGTGGCTGTGTTAAAGGAATGTGGGCTAAAGCCAGATGCTTTTTTGTA CAATACGATTATGAAAGGTTACTGTTTGTTGAATAAAGGTATTGAGGCTGTTAGGATTTATAAACAGATGAAAGAGGAAGGAGTGGAGCCTGATCTTGTT ACATATAATACGTTGATTTTTGGGTTGTCAAAGTGCGGGAGAGTTAGTGAAGCTAAGAAGCTTTTGAAAATTATGGTTGAATCAGGCCATTTTCCTGATG CAGTTACATACACATCATTGATGAATGGGATGTGTAGAGAAGGGGATGTATTGGGTGCGGCGGCATTGTTGGAGGAGATGGAATTGAAAGGATGTAGTCC AAATTCGTGTACTTATAATACTTTGCTTCATGGGTTTTGCAAAGGGAGAAGGTTGAATAAGGGTGTTGAATTGTATGGGGTGATAAAAAAGGGTGGTATG AAGCTTGAGACAGCTTCTTATGCTACGTTTGTGAGAGCTCTTTGCAGGGAGGGTAGAGTTGCAGAAGCTTATGAGGTATTTGACTATGCAGTAGAGAGTA AGAGTTTAACTGATGTAGCTGCTTACACTACATTGGAGAGTACACTGAAGTGGTTGAAGAAAGCGCGAGAGCAAGGTCTTGCTGTATAG
AA sequence Show only first row Show all	>Potri.005G103300.1 pacid=42803436 polypeptide=Potri.005G103300.1.p locus=Potri.005G103300 ID=Potri.005G103300.1.v4.1 annot-version=v4.1 MGKFPPSFRSAISSTSLIKNTPSQQQQQPHYFPKKLTKKNSPKPHETETPPPHKSLFKTSSLNEAKSLFNSFISTTKAPLLDNLRLHNSFLQSYTSISTL DDSISLLDHMVKTLPSLSPDRSTYHVLLSQSCREPDSSLSSAQKVLNLMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLV KCLCKSRIFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLV TYNTLIFGLSKCGRVSEAKKLLKIMVESGHFPDAVTYTSLMNGMCREGDVLGAAALLEEMELKGCSPNSCTYNTLLHGFCKGRRLNKGVELYGVIKKGGM KLETASYATFVRALCREGRVAEAYEVFDYAVESKSLTDVAAYTTLESTLKWLKKAREQGLAV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17670			Tetratricopeptide repeat (TPR)...		Potri.005G103300 [exp]	0	1
AT1G77030			hydrolases, acting on acid anh...		Potri.005G185900 [exp]	1.00	0.9436
AT1G04945			HIT-type Zinc finger family pr...		Potri.001G228000 [exp]	2.00	0.9238
AT5G57120			unknown protein		Potri.006G073100 [exp]	2.44	0.9174
AT1G03140			splicing factor Prp18 family p...		Potri.005G210600 [exp]	2.82	0.9009
AT5G62050		ATOXA1, OXA1AT,...	HOMOLOG OF YEAST OXIDASE ASSEM...		Potri.018G140100 [exp]	2.82	0.9081
AT2G31240			Tetratricopeptide repeat (TPR)...		Potri.005G222900 [exp]	6.70	0.9059
					Potri.002G246900 [exp]	6.70	0.8984
AT5G06160		ATO	ATROPOS, splicing factor-relat...		Potri.015G017200 [exp]	7.74	0.8827
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.009G051400 [exp]	8.12	0.8960
AT3G61370			Protein of unknown function (D...		Potri.016G069200 [exp]	8.48	0.9045

Compare expression of checked genes

Potri.005G103300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.