Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 146 / 8e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 134 / 5e-37 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35680 136 / 2e-36 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 119 / 1e-31 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 115 / 1e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 112 / 4e-29 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 111 / 1e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51410 111 / 1e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 108 / 7e-28 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 107 / 2e-27 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G059700 [exp] 491 / 5e-177 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 208 / 1e-65 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103700 [exp] 174 / 5e-52 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249100 [exp] 159 / 1e-46 AT2G17080 149 / 1e-43 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103600 [exp] 154 / 4e-45 AT4G35690 171 / 6e-52 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 151 / 5e-44 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182250 [exp] 151 / 1e-43 AT2G17080 191 / 1e-59 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G248950 [exp] 150 / 1e-43 AT2G17080 160 / 4e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.002G012466 [exp] 149 / 2e-43 AT2G17080 158 / 3e-47 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028380 [exp] 232 / 2e-75 AT4G35680 129 / 4e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041833 [exp] 224 / 6e-72 AT4G35680 130 / 1e-34 Arabidopsis protein of unknown function (DUF241) (.1) Lus10028381 [exp] 130 / 2e-35 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025126 [exp] 120 / 3e-32 AT2G17080 218 / 1e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023960 [exp] 118 / 2e-31 AT2G17080 227 / 3e-74 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023959 [exp] 117 / 4e-31 AT2G17080 224 / 3e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 116 / 1e-30 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041835 [exp] 117 / 2e-30 AT4G35690 98 / 3e-23 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 115 / 2e-30 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 113 / 1e-29 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G103400.1 pacid=42803181 polypeptide=Potri.005G103400.1.p locus=Potri.005G103400 ID=Potri.005G103400.1.v4.1 annot-version=v4.1 ATGGCAAGCTTATCTCCAATTAATTCTGCGCACCACCCTGTTAGGTCCATTAGCTTGCCTTCTAGGTCACATCCGAATTCTCTCAAAGTCGAAGCTCAGC TAACAAAGCTAAGAACTTGGGAATCATCTACGAATCCTTTAAGAGCTGAAACTATTCAAATGAGTTTGACTAAGCTAGCAGAGTTGTTTAATTGCATTCA AGACCTCATTCACTCACCACTCACCCAGCAAGCTTTTCATCATCAACATTTAAGTCATGTGGAAGGAGCAATTGAGGGTTCGGTTGGCTTGTTAGACGTG TGTAGCACGGTAAGGGATTTGTTCTTGACAATGAAAGAACATGTCCAGGACATGCAGTCCCTGCTACGAAGGCGCGGAGCTAGAGATTTAAGCATCGAAA GCAACGTTCTTGCTTACGTTAGCTTCAGAAAGAAGACAACGAAGGAAATCACCAGGTCCATTAGAACATTGAAAAGAACCGCAAGCAATGTTAATGGATC CTACCATTCCAGCACGGAGGTAGATAACCAGCAGTACTCATATGTGATCGAGGTTATAAATGAAGCAAGGGCTATCGCTATTTCAATCTTCCGATCTCTA GTTCTTTTCCTATCCATGCCGGAAGTGAAGAAGAACACCGGCGGATGGTCGTTGATATCGAAACTGATACGTTCAGGGTTGCTAGCTTCTGATAAAGGTC AGAAGATTTTCAATGAAGTAGGGAATGTTGACATTGCTCTATGTTCCATTCAAGGACAAATGCGGAAAAATGATGCCAAGATCGACGTGCAAGAAGTGCA AAGGAGATTAGAGACACTTGATGTGTGCATCAATGGTTTTAATGCAAAATTAGATTGCATTTTTAGATGTTTAATACAAAATAGAGTGTCCCTTCTCAAT CTCGTTACTCCTTGA
AA sequence Show only first row Show all	>Potri.005G103400.1 pacid=42803181 polypeptide=Potri.005G103400.1.p locus=Potri.005G103400 ID=Potri.005G103400.1.v4.1 annot-version=v4.1 MASLSPINSAHHPVRSISLPSRSHPNSLKVEAQLTKLRTWESSTNPLRAETIQMSLTKLAELFNCIQDLIHSPLTQQAFHHQHLSHVEGAIEGSVGLLDV CSTVRDLFLTMKEHVQDMQSLLRRRGARDLSIESNVLAYVSFRKKTTKEITRSIRTLKRTASNVNGSYHSSTEVDNQQYSYVIEVINEARAIAISIFRSL VLFLSMPEVKKNTGGWSLISKLIRSGLLASDKGQKIFNEVGNVDIALCSIQGQMRKNDAKIDVQEVQRRLETLDVCINGFNAKLDCIFRCLIQNRVSLLN LVTP

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103400 [exp]	0	1
AT5G24360		AtIRE1b, ATIRE1...	ARABIDOPSIS THALIANA INOSITOL ...		Potri.002G007201 [exp]	41.49	0.7264
AT4G37940	MADS	AGL21	AGAMOUS-like 21 (.1)		Potri.009G079000 [exp]	50.19	0.7219
AT3G26790	B3	FUS3	FUSCA 3, AP2/B3-like transcrip...		Potri.017G061200 [exp]	80.00	0.6473
AT4G19490		ATVPS54	ARABIDOPSIS THALIANA VPS54 HOM...		Potri.001G442900 [exp]	80.49	0.6925
AT1G27980		DPL1, ATDPL1	dihydrosphingosine phosphate l...		Potri.001G059001 [exp]	151.41	0.6469

Compare expression of checked genes

Potri.005G103400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.