Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35690 171 / 8e-52 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17680 147 / 3e-42 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35710 140 / 9e-40 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17080 134 / 8e-38 Arabidopsis protein of unknown function (DUF241) (.1) AT2G17070 127 / 6e-35 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35210 123 / 1e-33 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35200 118 / 1e-31 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35660 107 / 2e-27 Arabidopsis protein of unknown function (DUF241) (.1) AT4G35720 104 / 5e-26 Arabidopsis protein of unknown function (DUF241) (.1) AT3G51400 94 / 2e-22 Arabidopsis protein of unknown function (DUF241) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G103700 [exp] 441 / 3e-157 AT4G35690 179 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103800 [exp] 218 / 9e-70 AT4G35720 165 / 1e-48 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182550 [exp] 192 / 7e-60 AT2G17080 196 / 6e-62 Arabidopsis protein of unknown function (DUF241) (.1) Potri.004G182400 [exp] 169 / 4e-51 AT2G17070 193 / 2e-60 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142700 [exp] 165 / 5e-49 AT2G17080 204 / 9e-65 Arabidopsis protein of unknown function (DUF241) (.1) Potri.009G142500 [exp] 160 / 2e-47 AT2G17070 175 / 2e-53 Arabidopsis protein of unknown function (DUF241) (.1) Potri.007G059700 [exp] 160 / 3e-47 AT4G35660 117 / 7e-31 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G249000 [exp] 154 / 2e-45 AT2G17080 159 / 1e-47 Arabidopsis protein of unknown function (DUF241) (.1) Potri.005G103400 [exp] 154 / 5e-45 AT4G35690 145 / 1e-41 Arabidopsis protein of unknown function (DUF241) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028381 [exp] 216 / 3e-69 AT4G35690 173 / 1e-52 Arabidopsis protein of unknown function (DUF241) (.1) Lus10041834 [exp] 151 / 1e-44 AT4G35690 140 / 1e-40 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023952 [exp] 140 / 3e-40 AT2G17080 220 / 1e-71 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023962 [exp] 137 / 7e-39 AT2G17080 214 / 4e-69 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023965 [exp] 137 / 8e-39 AT2G17080 222 / 2e-72 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023951 [exp] 136 / 2e-38 AT4G35210 216 / 4e-70 Arabidopsis protein of unknown function (DUF241) (.1) Lus10023964 [exp] 135 / 3e-38 AT2G17080 223 / 8e-73 Arabidopsis protein of unknown function (DUF241) (.1) Lus10014447 [exp] 134 / 6e-38 AT2G17080 205 / 2e-65 Arabidopsis protein of unknown function (DUF241) (.1) Lus10025119 [exp] 133 / 2e-37 AT2G17080 206 / 6e-66 Arabidopsis protein of unknown function (DUF241) (.1) Lus10022635 [exp] 132 / 5e-37 AT4G35200 175 / 3e-54 Arabidopsis protein of unknown function (DUF241) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0133 [poplar] [flax] AT14A-like PF03087 [poplar] [flax] DUF241 Arabidopsis protein of unknown function
Representative CDS sequence Show only first row Show all	>Potri.005G103600.1 pacid=42804180 polypeptide=Potri.005G103600.1.p locus=Potri.005G103600 ID=Potri.005G103600.1.v4.1 annot-version=v4.1 ATGTCCGGTAAATACCGTGTTAGATCAGTTAGCTTGCCTTCAAGATCACACCCCACAACACTAACAGTCGAAGAAGAGCTGAACAAGCTCAAAGCATGGC AGGCATTGTCAACATCAGGGTCCATTTGCAATGGTCTATTGGGAGTGGAGGACTTGTACAAATATGTGGATGAGTTTCTCAACTTGGCATCAACCCAAGA AGTCCTCTCTCGCCATGAAAATGGAAAATGCCACAACGAATTATTGGACGGGTCAGTGAGGCTCTTAGATGTTTGCAGCATTGCAAGGGACACCATGTTG AGGTTTAAGGAGCAAATTCAAGCTCTTCAGTCCGCTTTACGCAGGAGAAAGGGAGATTCAAGCATAGAAAGCAGTGTAGCTACTTTTACTTGCTTCAGGA AGAAGATGAAAAAGGATGCCAAAAAGTTGATTGCTTCATTGAAGCAAATGGATAACAAACTTGGGGCATCTTCACTTCTAGATCAAGACCAGCACCTCTC CGCGGTGATAAAGGTGATCAGAGAAGTTAATGTTATTAACTGTTCCATCTTCCAATCCCTCCTGTTGTTCATGTCAACATCATCCAAGCCAAAACAAAGC AGGTGGTCCCTTGTTTCGAAGTTGATGCACAAGGGAGAAATAGCCTGTGAAGAGAAGCAAGAAAATGTTAATGAGTTGGTAGCAGTGTATGCTGCACTAA GTGAAGTGTCTGATTCCGAGAAGGTGAAAATTACCTATAAGAAACTTGAGGCTTTGGTGATCAGCATTGAAGATCTCGAGAGTTGTTTGGAGCGTGTATT CAGGGTCTTGATTAAAACAAGAGCCTCTCTTTTGAACGTAATCTCCCTATAG
AA sequence Show only first row Show all	>Potri.005G103600.1 pacid=42804180 polypeptide=Potri.005G103600.1.p locus=Potri.005G103600 ID=Potri.005G103600.1.v4.1 annot-version=v4.1 MSGKYRVRSVSLPSRSHPTTLTVEEELNKLKAWQALSTSGSICNGLLGVEDLYKYVDEFLNLASTQEVLSRHENGKCHNELLDGSVRLLDVCSIARDTML RFKEQIQALQSALRRRKGDSSIESSVATFTCFRKKMKKDAKKLIASLKQMDNKLGASSLLDQDQHLSAVIKVIREVNVINCSIFQSLLLFMSTSSKPKQS RWSLVSKLMHKGEIACEEKQENVNELVAVYAALSEVSDSEKVKITYKKLEALVISIEDLESCLERVFRVLIKTRASLLNVISL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35690			Arabidopsis protein of unknown...		Potri.005G103600 [exp]	0	1
AT5G15290		CASP5	Casparian strip membrane domai...		Potri.012G032300 [exp]	1.41	0.9595
					Potri.014G178900 [exp]	3.87	0.9554
AT1G06225		CLE3	CLAVATA3/ESR-RELATED 3 (.1)		Potri.004G053700 [exp]	5.19	0.8755
					Potri.016G047700 [exp]	5.65	0.9450
					Potri.001G472101 [exp]	6.70	0.9401
AT2G38870			Serine protease inhibitor, pot...		Potri.006G212200 [exp]	9.79	0.9264
AT4G08780			Peroxidase superfamily protein...		Potri.003G214900 [exp]	9.89	0.9046
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.006G002600 [exp]	10.81	0.9145
AT5G27060		AtRLP53	receptor like protein 53 (.1)		Potri.001G389100 [exp]	12.96	0.9100	PSCLRR52.53
AT1G35910		TPPD	trehalose-6-phosphate phosphat...		Potri.012G001000 [exp]	14.42	0.9224

Compare expression of checked genes

Potri.005G103600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.