Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51390 274 / 2e-91 DHHC-type zinc finger family protein (.1) AT4G24630 74 / 6e-15 DHHC-type zinc finger family protein (.1) AT5G50020 73 / 2e-14 DHHC-type zinc finger family protein (.1.2) AT3G48760 72 / 3e-14 DHHC-type zinc finger family protein (.1) AT3G56930 71 / 1e-13 DHHC-type zinc finger family protein (.1.2) AT3G26935 69 / 3e-13 DHHC-type zinc finger family protein (.1) AT2G40990 69 / 5e-13 DHHC-type zinc finger family protein (.1) AT5G05070 68 / 6e-13 DHHC-type zinc finger family protein (.1) AT5G41060 66 / 3e-12 DHHC-type zinc finger family protein (.1.2) AT3G56920 65 / 8e-12 DHHC-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G104700 [exp] 485 / 2e-174 AT3G51390 374 / 1e-129 DHHC-type zinc finger family protein (.1) Potri.007G060100 [exp] 402 / 5e-142 AT3G51390 341 / 1e-116 DHHC-type zinc finger family protein (.1) Potri.012G103300 [exp] 79 / 1e-16 AT3G26935 507 / 1e-178 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 75 / 5e-15 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.002G065500 [exp] 74 / 1e-14 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.017G063800 [exp] 74 / 1e-14 AT3G26935 671 / 0.0 DHHC-type zinc finger family protein (.1) Potri.015G101900 [exp] 74 / 1e-14 AT3G26935 466 / 2e-162 DHHC-type zinc finger family protein (.1) Potri.001G325400 [exp] 72 / 4e-14 AT3G26935 688 / 0.0 DHHC-type zinc finger family protein (.1) Potri.018G121200 [exp] 71 / 7e-14 AT5G20350 951 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028384 [exp] 321 / 6e-110 AT3G51390 374 / 2e-129 DHHC-type zinc finger family protein (.1) Lus10041837 [exp] 316 / 8e-108 AT3G51390 369 / 2e-127 DHHC-type zinc finger family protein (.1) Lus10035177 [exp] 75 / 4e-15 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10032009 [exp] 75 / 5e-15 AT3G26935 694 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 74 / 9e-15 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10010447 [exp] 74 / 1e-14 AT3G56930 451 / 3e-152 DHHC-type zinc finger family protein (.1.2) Lus10012096 [exp] 74 / 1e-14 AT3G56930 478 / 7e-167 DHHC-type zinc finger family protein (.1.2) Lus10022451 [exp] 72 / 5e-14 AT3G26935 486 / 3e-170 DHHC-type zinc finger family protein (.1) Lus10016754 [exp] 72 / 5e-14 AT3G26935 473 / 6e-165 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 71 / 1e-13 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [poplar] [flax] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G104800.1 pacid=42804480 polypeptide=Potri.005G104800.1.p locus=Potri.005G104800 ID=Potri.005G104800.1.v4.1 annot-version=v4.1 ATGATTTTTTTACCTTCCATGTCGATTTTCAATTTCTGCCACCGTTTTGTTCCTTGCCTTGCCGATCCAGCAACGAGATCTTCGTTGGGGTTGAAAGCAG CATTAGTGGTGTTGCATATTGTATATGCGGGCATTCTCTTTCTTTTTGACAGTGATTTAATAGAGAAAACAAAACAAGAGCCATGGTCCTACACGGGATT ATATCTGTTGCTGTTTGTTGCAACATTGATTCAATACTTTGTTGCATCATATTCTTCTCCCGGCTATGTCCTTGATGCAATGAGGGATGTGAATGAGAAA AATTCTTTATTTAGAAAGGCATCAATGTTGTCCAAACAGCCTGCTTCAAGCAAAAATGGAAGCTTGGTTATTACTGTGGAAGGAAGTCAGTCAGAAAGAA ATATTCCAGGAAGTAATGTTACATCTTGGACAAAGCTTGTTCTGGACATGTATCCACCTGGAATGTCTGTTAGAACTTTGACATGTTCCTTTTGCAATGT TGAACAGCCTCCACGAGCGAAGCATTGCCATGATTGTGATAGATGTGTTCTTCAGTTTGACCATCATTGTGTTTGGCTTGGGGCATGCTTTGGCTGGGGA AATCATTGTCGATTTTGGTGGTACATTTTTGAAGAAACTGCACTATGCATTTGGACTGGCATCTTGTACATCACATCCTTGAAGGCTAACATCTCAAGAG CTTGGTGGAAGGATGTGATTATGATCTTGCTATTGGTTACTTTATTAGTAGCACATATCGCCGTGGTGTGTCCAAAGATATTGCAATTATTGCACTTTGA CGGTATCCATTCGTGA
AA sequence Show only first row Show all	>Potri.005G104800.1 pacid=42804480 polypeptide=Potri.005G104800.1.p locus=Potri.005G104800 ID=Potri.005G104800.1.v4.1 annot-version=v4.1 MIFLPSMSIFNFCHRFVPCLADPATRSSLGLKAALVVLHIVYAGILFLFDSDLIEKTKQEPWSYTGLYLLLFVATLIQYFVASYSSPGYVLDAMRDVNEK NSLFRKASMLSKQPASSKNGSLVITVEGSQSERNIPGSNVTSWTKLVLDMYPPGMSVRTLTCSFCNVEQPPRAKHCHDCDRCVLQFDHHCVWLGACFGWG NHCRFWWYIFEETALCIWTGILYITSLKANISRAWWKDVIMILLLVTLLVAHIAVVCPKILQLLHFDGIHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51390			DHHC-type zinc finger family p...		Potri.005G104800 [exp]	0	1
AT3G01100		ATHYP1, HYP1	ARABIDOPSIS THALIANA HYPOTHETI...		Potri.004G115800 [exp]	1.73	0.6630	HYP1.1
AT5G27540		MIRO1, EMB2473	embryo defective 2473, MIRO-re...		Potri.005G033700 [exp]	2.82	0.6479
AT5G26040		HDA2	histone deacetylase 2 (.1.2)		Potri.006G230300 [exp]	14.42	0.5735	HDA910
AT1G03190		ATXPD, UVH6	ULTRAVIOLET HYPERSENSITIVE 6, ...		Potri.002G054000 [exp]	22.36	0.5709	Pt-UVH6.1
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Potri.009G167600 [exp]	24.24	0.5590
AT2G21120			Protein of unknown function (D...		Potri.001G305700 [exp]	26.73	0.5662
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	30.24	0.5343
AT2G24170			Endomembrane protein 70 protei...		Potri.006G184200 [exp]	40.24	0.4638
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.001G096100 [exp]	45.89	0.5310
AT1G21280			unknown protein		Potri.006G249450 [exp]	54.11	0.4815

Compare expression of checked genes

Potri.005G104800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.