Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55050 209 / 6e-64 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT3G04290 200 / 1e-60 ATLTL1, LTL1 Li-tolerant lipase 1 (.1) AT5G18430 196 / 4e-59 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT4G28780 194 / 3e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G33370 193 / 5e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT2G42990 192 / 7e-58 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G41890 190 / 1e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G71691 189 / 2e-56 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) AT1G71250 186 / 4e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT1G74460 184 / 9e-55 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G180400 [exp] 323 / 2e-108 AT4G28780 200 / 4e-61 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.011G089700 [exp] 243 / 2e-77 AT5G55050 375 / 3e-129 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.002G253400 [exp] 208 / 9e-64 AT4G28780 558 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Potri.019G024400 [exp] 201 / 7e-61 AT3G04290 538 / 0.0 Li-tolerant lipase 1 (.1) Potri.019G024800 [exp] 201 / 1e-60 AT5G33370 544 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024700 [exp] 199 / 2e-60 AT5G33370 549 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G051100 [exp] 197 / 1e-59 AT5G33370 563 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.019G024600 [exp] 196 / 3e-59 AT5G33370 568 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2) Potri.013G102500 [exp] 195 / 1e-58 AT1G71691 481 / 2e-170 GDSL-like Lipase/Acylhydrolase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025105 [exp] 313 / 2e-104 AT5G55050 233 / 2e-73 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023980 [exp] 313 / 2e-104 AT5G55050 215 / 1e-66 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10023979 [exp] 312 / 4e-104 AT5G55050 229 / 5e-72 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10025104 [exp] 310 / 2e-103 AT5G55050 211 / 3e-65 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10037113 [exp] 288 / 1e-94 AT3G04290 192 / 6e-58 Li-tolerant lipase 1 (.1) Lus10036966 [exp] 283 / 7e-93 AT3G04290 198 / 3e-60 Li-tolerant lipase 1 (.1) Lus10037112 [exp] 279 / 4e-91 AT5G55050 176 / 1e-51 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10021540 [exp] 234 / 1e-73 AT5G55050 357 / 5e-122 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10026645 [exp] 198 / 8e-60 AT5G55050 154 / 2e-43 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) Lus10019095 [exp] 197 / 1e-59 AT1G74460 550 / 0.0 GDSL-like Lipase/Acylhydrolase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [poplar] [flax] SGNH_hydrolase PF00657 [poplar] [flax] Lipase_GDSL GDSL-like Lipase/Acylhydrolase
Representative CDS sequence Show only first row Show all	>Potri.005G104900.1 pacid=42804044 polypeptide=Potri.005G104900.1.p locus=Potri.005G104900 ID=Potri.005G104900.1.v4.1 annot-version=v4.1 ATGAAAAATGCAAATACAAGTTACCATCAGAACTTTTGTATTGGGAAGCATATTCTCGTGAAAATCTTGAAATGCAAGCTGGGAGATGGTGAAACGTCCA AGTCGTGTAGTAAACACCAAGACATTCATTTCGTTACTAGCAAGGACGGAATCAAACATAGAATCTCAACCATATTTGTATTTGGTGACTCAACTGTTGA TGTTGGTACAAATAATTTCATACCCGAGTGCCGAGGAAAGGCGAACTTCCGGTATTATGGGATTGATTATCCCGGTTCGGTGCCTACCGGAAGGTTCAGC AATGGCTATAATTCTGCTGACAGTATCGCTAAGCTCTTTGGTTTTAAGAAGAGCCCGCAATCCTTTTTTTATCTTCTCAATCAAACATCGAGTTTCAAGC ACAACATACGCTGTGGTGTCAATTTTGCATCAGGAGGCTCAGGGATTATCGACACCACCGGATTCCAATTATTTACGAAGGTTGTGCCGATGAGAGAGCA GATTCAACAATTTTCAACAGTTTGTGGAAATCTCACAGAAATATTGGGTACAGAAGCTGCTGCTGATATGCTATCTAAGTCATTGTTTCTCATCAGTGTT GGAGGCAATGACCTCTTTGAATATCAGCTAAATATGTCTAAGAATGACCCTAATCTGCCTGAGGCGCAAGAGCTGCTACGCATTCTATCATCAACATATC AAATTCATCTACGGAGTTTGTACGACTTAGGGGCTCGGAAATTCGGCATTGTAAGCATCGCACCAATCGGATGCTGTCCGCTAGAGCGTGCTCTTGGAAC TGGTGAATGCAACAAGGAAATGAATGATTTGGCTCAAGCATTCTTCAATGCCACTGAGATCCTCTTACTAAATTTAACCTCTCAAGTTCAAGACATGAAG TACTCTCTTGGAAATCTTTATGAGATAGCTTATGAGGTCCTTCATAACCCACGATCCGTCGGTTTCAAGGAGGCGCAAACAGCATGCTGTGGGAATGGAA GCTACAATGCCGAATCCCCATGTAATCGAGATGCAAAGCTTTGTCCGAATCGTCGAGAGTACGTATTCTGGGATGCAATTCACCCAACTGAGCGTGCAGC CAAATTAGCAGCTCGAGCCCTCTTTGGTGGAGGAGCAAAATATGCAACACCTGTGAATTTTAGTCAGTTGATAGGGGATTAA
AA sequence Show only first row Show all	>Potri.005G104900.1 pacid=42804044 polypeptide=Potri.005G104900.1.p locus=Potri.005G104900 ID=Potri.005G104900.1.v4.1 annot-version=v4.1 MKNANTSYHQNFCIGKHILVKILKCKLGDGETSKSCSKHQDIHFVTSKDGIKHRISTIFVFGDSTVDVGTNNFIPECRGKANFRYYGIDYPGSVPTGRFS NGYNSADSIAKLFGFKKSPQSFFYLLNQTSSFKHNIRCGVNFASGGSGIIDTTGFQLFTKVVPMREQIQQFSTVCGNLTEILGTEAAADMLSKSLFLISV GGNDLFEYQLNMSKNDPNLPEAQELLRILSSTYQIHLRSLYDLGARKFGIVSIAPIGCCPLERALGTGECNKEMNDLAQAFFNATEILLLNLTSQVQDMK YSLGNLYEIAYEVLHNPRSVGFKEAQTACCGNGSYNAESPCNRDAKLCPNRREYVFWDAIHPTERAAKLAARALFGGGAKYATPVNFSQLIGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	0	1
					Potri.001G297101 [exp]	1.00	0.9958
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	4.24	0.9807	GER2.33
AT4G18910		ATNLM2, NIP1;2,...	NOD26-LIKE INTRINSIC PROTEIN 2...		Potri.002G097000 [exp]	6.70	0.9437
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118800 [exp]	6.78	0.9317
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.011G133800 [exp]	10.48	0.9079
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	10.58	0.9278	DREB41
					Potri.009G076050 [exp]	11.66	0.8690
					Potri.005G061780 [exp]	12.68	0.9606
AT3G17675			Cupredoxin superfamily protein...		Potri.013G030450 [exp]	15.49	0.9590
AT1G74590		ATGSTU10	glutathione S-transferase TAU ...		Potri.010G061500 [exp]	16.06	0.8946

Compare expression of checked genes

Potri.005G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.