Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35790 1289 / 0 ATPLDDELTA ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) AT2G42010 893 / 0 PLDBETA1 phospholipase D beta 1 (.1) AT4G00240 870 / 0 PLDBETA2 phospholipase D beta 2 (.1) AT4G11850 869 / 0 PLDGAMMA1, MEE54 maternal effect embryo arrest 54, phospholipase D gamma 1 (.1) AT4G11840 864 / 0 PLDGAMMA3 phospholipase D gamma 3 (.1) AT4G11830 853 / 0 PLDGAMMA2 phospholipase D gamma 2 (.1.2) AT3G15730 689 / 0 PLDALPHA1 phospholipase D alpha 1 (.1) AT1G52570 681 / 0 PLDALPHA2 phospholipase D alpha 2 (.1) AT5G25370 658 / 0 PLDALPHA3 phospholipase D alpha 3 (.1) AT1G55180 485 / 1e-159 PLDALPHA4, PLDEPSILON phospholipase D alpha 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060300 [exp] 1574 / 0 AT4G35790 1281 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.002G016100 [exp] 1234 / 0 AT4G35790 1194 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.005G246000 [exp] 1205 / 0 AT4G35790 1170 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.003G015000 [exp] 1131 / 0 AT4G35790 1088 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Potri.014G074700 [exp] 881 / 0 AT2G42010 1464 / 0.0 phospholipase D beta 1 (.1) Potri.002G152100 [exp] 878 / 0 AT2G42010 1438 / 0.0 phospholipase D beta 1 (.1) Potri.001G112100 [exp] 874 / 0 AT2G42010 1307 / 0.0 phospholipase D beta 1 (.1) Potri.018G131200 [exp] 697 / 0 AT1G52570 1204 / 0.0 phospholipase D alpha 2 (.1) Potri.001G193000 [exp] 687 / 0 AT1G52570 1412 / 0.0 phospholipase D alpha 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041855 [exp] 1302 / 0 AT4G35790 1280 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10012699 [exp] 1102 / 0 AT4G35790 1075 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10001293 [exp] 1101 / 0 AT4G35790 1071 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10004156 [exp] 1097 / 0 AT4G35790 1079 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10028401 [exp] 1088 / 0 AT4G35790 1050 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10005627 [exp] 1014 / 0 AT4G35790 969 / 0.0 ARABIDOPSIS THALIANA PHOSPHOLIPASE D DELTA, phospholipase D delta (.1.2.3) Lus10006819 [exp] 886 / 0 AT2G42010 1465 / 0.0 phospholipase D beta 1 (.1) Lus10005782 [exp] 882 / 0 AT2G42010 1456 / 0.0 phospholipase D beta 1 (.1) Lus10014146 [exp] 840 / 0 AT2G42010 1254 / 0.0 phospholipase D beta 1 (.1) Lus10006718 [exp] 834 / 0 AT2G42010 1264 / 0.0 phospholipase D beta 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0479 [poplar] [flax] PLD PF00614 [poplar] [flax] PLDc Phospholipase D Active site motif CL0479 [poplar] [flax] PF12357 [poplar] [flax] PLD_C Phospholipase D C terminal CL0479 [poplar] [flax] PLD PF13091 [poplar] [flax] PLDc_2 PLD-like domain
Representative CDS sequence Show only first row Show all	>Potri.005G105600.3 pacid=42804616 polypeptide=Potri.005G105600.3.p locus=Potri.005G105600 ID=Potri.005G105600.3.v4.1 annot-version=v4.1 ATGGCTGAGAGCTCCAGTCACAACCACCTCATCTACCTTCACGGTGACCTGGACTTGCTCATAGTTGAAGCCAGATCTTTACCCAACATGGATGTTATCT CCAAGAACTTCCGCCAGTGCTTCAATGTTTGCATCCCTTCTTCCGCCACCACCACCACCACCAAATCCATCGACCACCATGACCGCGACCACCGCCACCA CCGTGACCGCGACCACCGCCACCACAGTGATGCCGACAAGAAGATCCACCACCGTCACATTATCACCAGTGATGCATACGTGACAGTGACAGTCCCTCAG GTGACACTCGCCCGCACCCGCGTGTTGAAAAATGCCGCAACCCCCGTTTGGGAGCAAAGGTTCAATATCCCTTTGGCACATCCTGTTAAAGATATTGAAT TTCACGTCAAAGATAATGATTTGTTCGGTGCAGAGTTGATCGGGACCGTGAAGATACCTGCATCAACAGTGTTGTCGGGGGAGTTTATTCAGGGATGGTT TCCAATAATTGCTGCATCAGGGAAACCACCAAAGCCCGACACAGCTCTTTATCTGGAATTGAAATTCACACCTTTTGAGAAAAACCCTTTATACCAGAAT GGGTTTGGAGGTGATCCTGTAGTAAATGGGGTGAGGGGTACCTATTTCCCGGTCCGAAAAGGCGGTCATGTGACACTCTATCAAGATGCTCATGTGAAGG ATCATGACTTGCCTGAGATTGAGATTGATGGAGGGAAGGTTTTTAAGCAAGAGAGGTGCTGGGAGGATATTTGTTATGCCATATCCGAAGCTCATCATAT GATTTATATTGTTGGCTGGTCTGTCTTTTATAAGATTAAGTTGGTTAGAGAACCAACTAGGCCATTGCCAAGAGGTGGAAATTTGACACTTGGGGAGCTG CTGAAGTATAAGAGCGAGGAAGGTGTGAGAGTCTTGTTGTTGGTTTGGGATGATAGGACTTCTCATGATAAATTTGGGATTAAAACAGCAGGAGTTATGG CAACACATGATGAAGAAACCAGAAGATTCTTCAAGCATTCATCTGTTACTTGTGTGTTGGCACCTCGATATGCCAGCAGTAAGCTCAGTTTTCTCAAGCA ACAGATTGTTGGAACCATGTTTACGCACCATCAGAAATGTGTTCTTGTGGACACCCAAGCATCCGGTAATAACAGGAAGATCACTGCATTTATAGGAGGC ATTGATCTCTGCGATGGACGGTATGATACTCCCGGACATAGACTGTTTCATGATCTCAACACTGTCTTTCAGGATGATTTCCACAATCCAACATTTCCTG CTTTAACCAAAGCACCAAGGCAGCCCTGGCATGACCTGCATTGTAAAATTGATGGGCCAGCTGCATATGATGCTCTTATAAACTTTGAGCAGCGTTGGAG GAAAGCAACAAAGTGGACAGAGTTGGGACTGCGTTTCAAAAGAAAATCCCACTGGAGCGATGATTCATTGATAAAGATAGAACGGATTTCGTGGATACTA AGTCCTCACCTTTCTGAAACAAAGGATGGAACCACAATAGTTCCACCTGATGATCCCACAGTATATGTTTCCAGTGAAGAAGGCCCTGAGAATTGGCATG TCCAGATTTTTAGGTCCATTGACTCCGGATCACTGAAAGGATTTCCCAAAACTATTGATGAGTGTCAGGATCAGAACCTAGTTGTTGCAAAAGATCTGGT TGTAGATAAAAGCATTCAAACAGCATACATACAAGCCATCAGATCTGCTCAGCATTTCATATATATTGAAAATCAGTATTTTCTTGGATCCTCATATGCA TGGCCATCATATAAGGATGCAGGAGCTGATAATCTAATCCCAATGGAGTTGGCATTGAAGATTGTTAGTAAAATTAGAGCCAAAGAGAGATTTGCAGTAT ATGTTGTTATTCCATTGTGGCCAGAGGGTGATCCAAAGACCAACACTGTGCAAGAAATTCTCTTTTGGCAGAGCCAGACAATGCAAGCAATGTATGAAAA AATTGCACAGGAACTTAAATCAATGAATCTTGTAGATTCACATCCTCAAGACTACCTCAATTTCTATTGCATTGGTAAACGAGAAGAAATTCCCCAAGAA TTGTCGAGTGCTAATGGTGGAACGGTCTCCGAATCTTTTAAATCTCAGCGATTCATGATTTATGTCCATGCAAAGGGAATGGTAGTGGACGATGAGTATG TGATAATGGGATCTGCAAATATTAACCAGAGATCCATGGCTGGGTCAAAAGACACTGAGATAGCTATGGGTTCATATCAACCCCGGCACACATGGGCTGC AAGGAAGAAGCATCCACGTGGACAGATTTATGGATATAGAATGTCACTATGGGTGGAACATCTTGGTGAGATAGATGAACTGTTCATGGAACCCGAGGAT TTGCATTGTGTGAAGAAAGTAAATAAAATTGCCGAGGACAACTGGAGGAAATTCACAGATCCGAATTTCAAACTGTTGCAAGGACATCTTCTCAAGTATC CTTTGCTGGTAGATGCTGATGGGAAGGTGTGTCCACTTCCTGGACATGAGAATTTCCCAGATGTTGGTGGCAAGGTGCTTGGAGCTCATTCCACCACACT TCCCGATGTGTTAACAACATAA
AA sequence Show only first row Show all	>Potri.005G105600.3 pacid=42804616 polypeptide=Potri.005G105600.3.p locus=Potri.005G105600 ID=Potri.005G105600.3.v4.1 annot-version=v4.1 MAESSSHNHLIYLHGDLDLLIVEARSLPNMDVISKNFRQCFNVCIPSSATTTTTKSIDHHDRDHRHHRDRDHRHHSDADKKIHHRHIITSDAYVTVTVPQ VTLARTRVLKNAATPVWEQRFNIPLAHPVKDIEFHVKDNDLFGAELIGTVKIPASTVLSGEFIQGWFPIIAASGKPPKPDTALYLELKFTPFEKNPLYQN GFGGDPVVNGVRGTYFPVRKGGHVTLYQDAHVKDHDLPEIEIDGGKVFKQERCWEDICYAISEAHHMIYIVGWSVFYKIKLVREPTRPLPRGGNLTLGEL LKYKSEEGVRVLLLVWDDRTSHDKFGIKTAGVMATHDEETRRFFKHSSVTCVLAPRYASSKLSFLKQQIVGTMFTHHQKCVLVDTQASGNNRKITAFIGG IDLCDGRYDTPGHRLFHDLNTVFQDDFHNPTFPALTKAPRQPWHDLHCKIDGPAAYDALINFEQRWRKATKWTELGLRFKRKSHWSDDSLIKIERISWIL SPHLSETKDGTTIVPPDDPTVYVSSEEGPENWHVQIFRSIDSGSLKGFPKTIDECQDQNLVVAKDLVVDKSIQTAYIQAIRSAQHFIYIENQYFLGSSYA WPSYKDAGADNLIPMELALKIVSKIRAKERFAVYVVIPLWPEGDPKTNTVQEILFWQSQTMQAMYEKIAQELKSMNLVDSHPQDYLNFYCIGKREEIPQE LSSANGGTVSESFKSQRFMIYVHAKGMVVDDEYVIMGSANINQRSMAGSKDTEIAMGSYQPRHTWAARKKHPRGQIYGYRMSLWVEHLGEIDELFMEPED LHCVKKVNKIAEDNWRKFTDPNFKLLQGHLLKYPLLVDADGKVCPLPGHENFPDVGGKVLGAHSTTLPDVLTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35790		ATPLDDELTA	ARABIDOPSIS THALIANA PHOSPHOLI...		Potri.005G105600 [exp]	0	1
AT3G22790			Kinase interacting (KIP1-like)...		Potri.008G156200 [exp]	1.73	0.7801
AT1G52150	HD	ATHB15, ICU4, C...	INCURVATA 4, CORONA, Homeobox-...		Potri.003G050100 [exp]	3.00	0.8215	ATHB.11
AT1G53050			Protein kinase superfamily pro...		Potri.011G119400 [exp]	3.16	0.7775
AT1G06590			unknown protein		Potri.004G081200 [exp]	5.74	0.7149
AT1G32960		ATSBT3.3	Subtilase family protein (.1)		Potri.001G450600 [exp]	8.94	0.7574
AT4G35240			Protein of unknown function (D...		Potri.002G011700 [exp]	9.53	0.7494
AT1G16290			unknown protein		Potri.008G084100 [exp]	12.08	0.7903
AT1G29200			O-fucosyltransferase family pr...		Potri.004G058900 [exp]	12.24	0.7640
AT5G20060			alpha/beta-Hydrolases superfam...		Potri.018G030200 [exp]	12.40	0.7315
AT4G17770		ATTPS5	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.001G139500 [exp]	13.07	0.6921

Compare expression of checked genes

Potri.005G105600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.