Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35785 158 / 4e-48 RNA-binding (RRM/RBD/RNP motifs) family protein AT1G07350 114 / 3e-32 SR45a serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G60650 58 / 8e-10 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G46020 52 / 8e-09 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G21440 55 / 1e-08 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G04280 54 / 2e-08 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT5G64200 54 / 2e-08 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT4G24770 54 / 2e-08 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G18630 51 / 5e-08 GR-RBP6 glycine-rich RNA-binding protein 6 (.1) AT5G06210 50 / 9e-08 RNA binding (RRM/RBD/RNP motifs) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G130301 [exp] 132 / 4e-38 AT4G35785 145 / 3e-43 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.009G041700 [exp] 120 / 7e-32 AT4G35785 139 / 6e-39 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.001G248100 [exp] 117 / 3e-31 AT1G07350 125 / 2e-35 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.001G101500 [exp] 96 / 7e-25 AT4G35785 97 / 1e-25 RNA-binding (RRM/RBD/RNP motifs) family protein Potri.003G023800 [exp] 54 / 1e-08 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.011G130300 [exp] 52 / 3e-08 AT5G54580 161 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G409800 [exp] 51 / 4e-08 AT5G54580 174 / 2e-56 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G149600 [exp] 53 / 5e-08 AT4G19610 646 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Potri.002G095800 [exp] 52 / 9e-08 AT5G64200 204 / 5e-65 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028400 [exp] 174 / 9e-55 AT4G35785 181 / 2e-57 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10041854 [exp] 172 / 3e-53 AT4G35785 179 / 6e-56 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10040705 [exp] 128 / 5e-35 AT1G07350 163 / 2e-46 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10018202 [exp] 126 / 1e-33 AT1G07350 145 / 1e-41 serine/arginine rich-like protein 45a, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10017507 [exp] 120 / 1e-33 AT4G35785 123 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10028776 [exp] 111 / 7e-30 AT4G35785 127 / 5e-36 RNA-binding (RRM/RBD/RNP motifs) family protein Lus10018277 [exp] 61 / 2e-10 AT4G19610 770 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040636 [exp] 60 / 3e-10 AT4G19610 700 / 0.0 nucleotide binding;nucleic acid binding;RNA binding (.1) Lus10040854 [exp] 55 / 7e-10 AT3G46020 112 / 1e-33 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10005891 [exp] 55 / 8e-09 AT3G45980 230 / 1e-76 HISTONE H2B, Histone superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.005G105700.1 pacid=42802387 polypeptide=Potri.005G105700.1.p locus=Potri.005G105700 ID=Potri.005G105700.1.v4.1 annot-version=v4.1 ATGGCTGATTCTCCAGTCAAAAGGGATTCACGCTCTCCTTCACCTTGGAGAGAGCAGTCGAGGTCCAGGTCAAGATCGTGGTCGAGGCCCAGGCCCAGGT CAAGATCCAGATCAAGATCATTGCCAAGGCCAAGGCATAGGTCACGGTCACAAAGTCGTGGAAGATCAAGGTCTAGAGATCAGGACAGGACGGAAGTCGT AAATCCTGGAAATACACTTTATGTGACAGGGCTGTCTACAAGGGTCACAGAAAGGGATCTTGAAGAACATTTCTCAAAGGAGGGAAAGGTTGCATCTTGT TTTCTTGTTGTGGAGCCCCGGACACGCATTTCTCGTGGGTTTGCTTTTGTTACAATGGACAATGTTGACGGTGCCAATCGTTGTGTGAAATATCTCAACC AGTCAGTTCTGGAGGGGCGATATATCACTGTGGAAAAGTCACGGAGGAAACGGCCAAGAACTCCAACTCCAGGACACTATCTTGGGCTGAAGAATACCAG GGACTATGGCTCTCGTGGTGATCGTGGTGGTGATCGTGGTGGTGATCGTGGTAGGTATCGTGGTGGCTATGGTCGTGATGACCATCGCAGGTCTCCAAGG CACTCTCCTTATCGTGGTGGTCGTGATTATTCTCCCAGGCGCTCTCCCTATGGTGGACGATCACGGAGGGACAGGTCCAGGTCCCCTTATTCTCCTAGAG GCTCTAGGTGA
AA sequence Show only first row Show all	>Potri.005G105700.1 pacid=42802387 polypeptide=Potri.005G105700.1.p locus=Potri.005G105700 ID=Potri.005G105700.1.v4.1 annot-version=v4.1 MADSPVKRDSRSPSPWREQSRSRSRSWSRPRPRSRSRSRSLPRPRHRSRSQSRGRSRSRDQDRTEVVNPGNTLYVTGLSTRVTERDLEEHFSKEGKVASC FLVVEPRTRISRGFAFVTMDNVDGANRCVKYLNQSVLEGRYITVEKSRRKRPRTPTPGHYLGLKNTRDYGSRGDRGGDRGGDRGRYRGGYGRDDHRRSPR HSPYRGGRDYSPRRSPYGGRSRRDRSRSPYSPRGSR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35785			RNA-binding (RRM/RBD/RNP motif...		Potri.005G105700 [exp]	0	1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.006G158538 [exp]	6.48	0.7446
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	9.79	0.7364
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Potri.014G103900 [exp]	9.94	0.7001	GIF2.2
AT5G10980			Histone superfamily protein (....		Potri.007G014300 [exp]	14.07	0.7166
AT1G65032			unknown protein		Potri.005G094100 [exp]	15.62	0.7357
AT1G13360			unknown protein		Potri.008G119800 [exp]	16.70	0.6498
AT2G26060		EMB1345	embryo defective 1345, Transdu...		Potri.001G221000 [exp]	17.49	0.6634
AT2G03780			Translin family protein (.1)		Potri.010G138300 [exp]	18.76	0.6770
AT1G27000			Protein of unknown function (D...		Potri.008G149000 [exp]	19.97	0.7127
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.017G149800 [exp]	21.74	0.6333

Compare expression of checked genes

Potri.005G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.