Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66055 457 / 1e-159 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT5G40160 182 / 1e-53 EMB139, EMB506 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) AT2G14255 81 / 2e-16 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G02620 78 / 2e-15 ATANK1, ANK1 ankyrin-like1 (.1) AT5G53470 74 / 3e-14 ACBP1 acyl-CoA binding protein 1 (.1) AT4G27780 73 / 7e-14 ACBP2 acyl-CoA binding protein 2 (.1) AT5G20350 69 / 3e-12 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 64 / 1e-11 Ankyrin repeat family protein (.1) AT2G31820 65 / 5e-11 Ankyrin repeat family protein (.1) AT4G19150 62 / 1e-10 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G060400 [exp] 684 / 0 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G295200 [exp] 169 / 8e-49 AT5G40160 317 / 4e-108 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Potri.003G103400 [exp] 75 / 6e-15 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 71 / 1e-13 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.003G163200 [exp] 69 / 3e-12 AT5G13300 1146 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Potri.013G062000 [exp] 67 / 9e-12 AT2G03430 94 / 2e-21 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 66 / 2e-11 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.015G010200 [exp] 65 / 2e-11 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1) Potri.010G161300 [exp] 64 / 3e-11 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041853 [exp] 460 / 3e-160 AT5G66055 465 / 2e-162 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10028399 [exp] 395 / 5e-134 AT5G66055 398 / 3e-135 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Lus10014522 [exp] 180 / 1e-52 AT5G40160 322 / 3e-109 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10032165 [exp] 154 / 5e-43 AT5G40160 293 / 3e-98 embryo defective 506, EMBRYO DEFECTIVE 139, Ankyrin repeat family protein (.1) Lus10001799 [exp] 76 / 3e-14 AT5G13300 1201 / 0.0 ASCULAR NETWORK DEFECTIVE 3, SCARFACE, ARF-GAP DOMAIN3, ARF GTPase-activating protein (.1) Lus10020505 [exp] 69 / 2e-12 AT2G14255 389 / 2e-131 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10037694 [exp] 69 / 6e-12 AT3G02850 659 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10002621 [exp] 67 / 8e-12 AT5G13530 99 / 6e-22 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10015687 [exp] 67 / 1e-11 AT3G02850 1231 / 0.0 STELAR K+ outward rectifier, STELAR K+ outward rectifier (.1) Lus10038108 [exp] 67 / 1e-11 AT5G20350 839 / 0.0 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies)
Representative CDS sequence Show only first row Show all	>Potri.005G105800.1 pacid=42803487 polypeptide=Potri.005G105800.1.p locus=Potri.005G105800 ID=Potri.005G105800.1.v4.1 annot-version=v4.1 ATGTCATTCCCAGCTCTGCTAAACCCACCACAAACCCCAAAATTACACGCCCTTCTATCTCTCCCTCCATCTCTCAAGTTTTCATCTTTCAAAATCCTGA AATTTCCCCAAAAAATCCACTCTTTCTCACCTTCTCTACAATCCCAATTCGCTATACAAAATTACGATTTTGAAGACCAAGACCATGCCATTGGTGGCTG TCTACTCTTTGAAGAAGGCATTTTTGAAGACCCATATTTGGAAACCAACTCAAATGCCATTGAGGACCCAAAGTTGAAAACTTTTAAGAAAAAGCAAAAA AGGGTTGTTCCTACAATTGAAGCAGAGAATTTGGTGCCAGAGAAATGGAGAGATGCGCAAGCAGAGATTAATATTGGAAAAAAGGAAAGGAGAAAGATTG CTCAAGAAATGGAATATAATAAAAAATTCGAAAGGAAAAAGAAAGGGTTGGTTCCTATTAGGAGTGTGAATCTAGAGGAATATCAGGCTTTTAAAGAAGC CAAATTGGCACAGTTGAAGCCACTTGTGCTCGGTAATCCAGAGAGTTTTAAAGAAGAGGAGAAAATGAAAGAGGACGAGGTGGAAGTGAAGGAGATTGTT AGCGAGAGAGTGAAAGGAAAGCATCCTAGATGGGCAGTTTATGGGAGAGGTTTAGATGATGTTAGAGAGTTTCTTAACAGTGAGGATTATGAGCCTGGCG AACATAAATCTGAGGGTAAACGCAAGTTGTTTACGAAAGAGGAAAAGGTTTTGTTGAATAAGCGGGTACCTGATCTAGCAGTTGCTAACTCTAGCAAATG GCTACCTCTCCACACCCTTGCTGCATCAGGAGAATTCCACCTTATGGATGCGTTGTTGAAGCACAATGTGGACATCAATGCTGCGGATGTGAATGGTTGG ACTGCACTTCACAGAGCAATAGTATGCAAAAAGCAAGCTATAACCAGCTATCTGTTGAGAGAATCAGCAGATCCTTTTGTTCGTGATGCAGAGGGTGCCA CCTTGATGCATTATGCAGTTCAAACTGCATCTGCTCCAGCTATCAAACTTCTTCTGTTATATAACGTTGATATAAACCTTCAGGACAATGATGGATGGAC ACCGTTACATCTTGCTGTTCAAACCCAGAGAACAGACATAGTGAAGCTTTTATTAATTAAAAGAGCGGACAGGACATTAAAAAACAAGGATGGCTCAACA CCACTCGATCTCTGCCTCTCTTCTGGTAGAGACACAAGGACCTACGAGCTTATCAAGCTGCTGAAGCAGTTCATGAAGAAACCAACTTTGGCAAAAAATC CTTATAACGCCTCAGCTTCCCAACTGCTTTAA
AA sequence Show only first row Show all	>Potri.005G105800.1 pacid=42803487 polypeptide=Potri.005G105800.1.p locus=Potri.005G105800 ID=Potri.005G105800.1.v4.1 annot-version=v4.1 MSFPALLNPPQTPKLHALLSLPPSLKFSSFKILKFPQKIHSFSPSLQSQFAIQNYDFEDQDHAIGGCLLFEEGIFEDPYLETNSNAIEDPKLKTFKKKQK RVVPTIEAENLVPEKWRDAQAEINIGKKERRKIAQEMEYNKKFERKKKGLVPIRSVNLEEYQAFKEAKLAQLKPLVLGNPESFKEEEKMKEDEVEVKEIV SERVKGKHPRWAVYGRGLDDVREFLNSEDYEPGEHKSEGKRKLFTKEEKVLLNKRVPDLAVANSSKWLPLHTLAASGEFHLMDALLKHNVDINAADVNGW TALHRAIVCKKQAITSYLLRESADPFVRDAEGATLMHYAVQTASAPAIKLLLLYNVDINLQDNDGWTPLHLAVQTQRTDIVKLLLIKRADRTLKNKDGST PLDLCLSSGRDTRTYELIKLLKQFMKKPTLAKNPYNASASQLL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.005G105800 [exp]	0	1
AT4G01037		AtWTF1	what's this factor?, Ubiquitin...		Potri.002G169300 [exp]	1.73	0.9796
AT2G47485			unknown protein		Potri.002G200000 [exp]	2.82	0.9767
AT2G37920		EMB1513	embryo defective 1513, copper ...		Potri.006G092100 [exp]	3.16	0.9761
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	3.16	0.9791
AT1G23400		CAF2, ATCAF2	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.010G042500 [exp]	3.46	0.9790
AT2G20020		CAF1, ATCAF1	RNA-binding CRS1 / YhbY (CRM) ...		Potri.006G163100 [exp]	5.65	0.9720
AT1G02150			Tetratricopeptide repeat (TPR)...		Potri.002G139400 [exp]	7.34	0.9760
AT2G21350			RNA-binding CRS1 / YhbY (CRM) ...		Potri.009G122500 [exp]	7.48	0.9677
AT3G02660		EMB2768	EMBRYO DEFECTIVE 2768, Tyrosyl...		Potri.014G140400 [exp]	8.12	0.9695
AT3G54090		FLN1	fructokinase-like 1 (.1)		Potri.016G109600 [exp]	8.77	0.9740

Compare expression of checked genes

Potri.005G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.