Plant FIBer expression Database

Potri.005G105900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66050 282 / 9e-94 Wound-responsive family protein (.1.2)
AT1G19660 128 / 3e-34 Wound-responsive family protein (.1.2)
AT1G75380 120 / 2e-31 ATBBD1 bifunctional nuclease in basal defense response 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G230600
[exp]
130 / 3e-35 AT1G75380 463 / 3e-165 bifunctional nuclease in basal defense response 1 (.1.2.3)
Potri.002G032500
[exp]
129 / 1e-34 AT1G75380 495 / 4e-178 bifunctional nuclease in basal defense response 1 (.1.2.3)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041852
[exp]
337 / 2e-115 AT5G66050 261 / 2e-85 Wound-responsive family protein (.1.2)
Lus10028398
[exp]
337 / 3e-115 AT5G66050 261 / 1e-85 Wound-responsive family protein (.1.2)
Lus10024277
[exp]
124 / 9e-33 AT1G75380 452 / 4e-161 bifunctional nuclease in basal defense response 1 (.1.2.3)
Lus10007390
[exp]
109 / 7e-27 AT1G19660 412 / 3e-144 Wound-responsive family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0671 AAA_lid PF02151 UVR UvrB/uvrC motif
CL0671 PF02577 DUF151 Domain of unknown function (DUF151)
Representative CDS sequence
>Potri.005G105900.3 pacid=42802358 polypeptide=Potri.005G105900.3.p locus=Potri.005G105900 ID=Potri.005G105900.3.v4.1 annot-version=v4.1
ATGCTAGGAGCTCAATTCCCAGCTCGTACATTCAGTGGCTTCAAGACTCTGAAGACAACAGATCAAGGAAATTACCCGACCTGTCGTTTAATCTCACCAC
AAAAAAACCCTCCTCCTAGTCCATCTTGTTCCTTTCAGTTCTCAGTTAAGAGGATACGGTGTCGCTTTCAATGTCTCAGATCAATATCAGTTTCTTGTAA
GGCTTCCAGTGATAGCAGTGGATCCACTAATGCTCATAATAATAATAATGGTCTTTATTATCTCCCTGCATCCCTTCTTGTCTCAGAGACAATTTCTCAT
TATCGAATGCGGAAGCAAGGATTTCAAGAGGAGGTTAGATGGCATTCATCTGGTAAATTGGTGTTTCCTTTTGGTCTGCAAGAAAGAAAGGAAGCGAGGC
CTAATACAGGATTATTAGGACATGGTTTTCTTCGTGGATTTCAAAGTCCCACGATTTTCCTTAAAGTTTCTTGTGATGGTGACTTTGTGCTGCCGATTAT
TGTTGGGGAGTTTGCTATTGAGAAATTGATAGATGGAATACAAGGAGATGATAATGCAGTTTGCGCTGATCAGTTCCAACTTGTGGGAAATGTAGCAGAA
GAGCTTGGATATGATGTAAAAATGGTACGGATTACAGAGAGAGTGGCAAATACTTACTTTGCAAGATTATGTTTTAGCAAGCCTGGGGAAAAGGATATTC
TTAGTGTGGATGCACGACCGTCAGATGCCATAAATGTGGCAAGTAGATGTAAGGCTCCAATTTATATAAGTAAACAAATTGTTTTAACTGATGCTATTCG
AATTGGTTATGGGGTGGGAAGAGTGCGTAATTCAAAGCCTATTTATGATGTGTCCCTTGATAGTGCTGCTGATGGTCCAGATTCACTAGTCGAGGAACTT
GATCTCGTAAGGAATATGAATTTAGCTGTTAAAGAGGAAAGGTACACTGATGCAGCCATGTGGAGAGACAAACTGATGGAGCTTCGCAAGTCAAGGCAGG
AACATTAG
AA sequence
>Potri.005G105900.3 pacid=42802358 polypeptide=Potri.005G105900.3.p locus=Potri.005G105900 ID=Potri.005G105900.3.v4.1 annot-version=v4.1
MLGAQFPARTFSGFKTLKTTDQGNYPTCRLISPQKNPPPSPSCSFQFSVKRIRCRFQCLRSISVSCKASSDSSGSTNAHNNNNGLYYLPASLLVSETISH
YRMRKQGFQEEVRWHSSGKLVFPFGLQERKEARPNTGLLGHGFLRGFQSPTIFLKVSCDGDFVLPIIVGEFAIEKLIDGIQGDDNAVCADQFQLVGNVAE
ELGYDVKMVRITERVANTYFARLCFSKPGEKDILSVDARPSDAINVASRCKAPIYISKQIVLTDAIRIGYGVGRVRNSKPIYDVSLDSAADGPDSLVEEL
DLVRNMNLAVKEERYTDAAMWRDKLMELRKSRQEH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66050 Wound-responsive family protei... Potri.005G105900
[exp]
0 1
AT3G24010 ATING1 ARABIDOPSIS THALIANA INHIBITOR... Potri.003G174000
[exp]
2.00 0.8474
AT4G26060 Ribosomal protein L18ae family... Potri.018G050900
[exp]
3.46 0.8377
AT2G28370 Uncharacterised protein family... Potri.009G014600
[exp]
6.92 0.8369
AT3G63120 CYCP1;1 cyclin p1;1 (.1) Potri.005G209800
[exp]
8.48 0.8024
AT2G40110 Yippee family putative zinc-bi... Potri.010G190000
[exp]
9.53 0.8032
AT1G11020 RING/FYVE/PHD zinc finger supe... Potri.006G154800
[exp]
12.96 0.7682
AT1G36380 unknown protein Potri.005G171000
[exp]
14.66 0.8203
AT1G68070 Zinc finger, C3HC4 type (RING ... Potri.008G134900
[exp]
15.58 0.7260
AT5G55000 FIP2 potassium channel tetramerisat... Potri.019G038400
[exp]
16.58 0.7941
AT1G15880 ATGOS11, GOS11 golgi snare 11 (.1) Potri.003G180800
[exp]
16.97 0.7517 GOS11.2

Potri.005G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.