Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CTS2.5
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47140 234 / 6e-77 AtSDR5 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G51680 231 / 3e-75 AtSDR2 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G52340 228 / 2e-74 SIS4, SDR1, ISI4, GIN1, ATABA2, SRE1, ABA2, ATSDR1 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47130 218 / 2e-70 AtSDR3 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G47120 217 / 3e-70 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29250 216 / 8e-70 AtSDR4 short-chain dehydrogenase reductase 4, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT4G03140 216 / 7e-69 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G29260 212 / 3e-68 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26770 211 / 2e-67 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT3G26760 206 / 2e-65 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G199900 [exp] 456 / 2e-164 AT2G47140 256 / 1e-85 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.004G200100 [exp] 386 / 2e-136 AT3G26770 257 / 2e-85 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G074000 [exp] 316 / 8e-109 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G207100 [exp] 315 / 2e-108 AT4G03140 241 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206400 [exp] 297 / 2e-101 AT3G51680 245 / 2e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.016G073900 [exp] 290 / 1e-98 AT3G51680 252 / 2e-83 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206500 [exp] 288 / 4e-98 AT1G52340 246 / 4e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206800 [exp] 278 / 8e-94 AT1G52340 246 / 5e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.006G206700 [exp] 270 / 6e-91 AT3G51680 236 / 4e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021320 [exp] 286 / 4e-97 AT1G52340 246 / 2e-81 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021312 [exp] 286 / 7e-97 AT3G51680 238 / 8e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016997 [exp] 285 / 9e-97 AT1G52340 249 / 2e-82 SHORT-CHAIN DEHYDROGENASE REDUCTASE 1, IMPAIRED SUCROSE INDUCTION 4, GLUCOSE INSENSITIVE 1, SHORT-CHAIN DEHYDROGENASE/REDUCTASE 1, ARABIDOPSIS THALIANA ABA DEFICIENT 2, ABA DEFICIENT 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021314 [exp] 285 / 1e-96 AT3G51680 238 / 6e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021318 [exp] 283 / 5e-96 AT3G51680 238 / 9e-78 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10021313 [exp] 283 / 1e-95 AT3G26770 232 / 3e-75 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10005262 [exp] 279 / 3e-94 AT3G51680 236 / 8e-77 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016995 [exp] 279 / 3e-94 AT3G51680 243 / 7e-80 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10016991 [exp] 278 / 1e-93 AT2G47140 238 / 2e-78 short-chain dehydrogenase reductase 5, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10014226 [exp] 262 / 1e-87 AT3G51680 230 / 1e-74 short-chain dehydrogenase/reductase 2, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13561 [poplar] [flax] adh_short_C2 Enoyl-(Acyl carrier protein) reductase
Representative CDS sequence Show only first row Show all	>Potri.005G106100.1 pacid=42802329 polypeptide=Potri.005G106100.1.p locus=Potri.005G106100 ID=Potri.005G106100.1.v4.1 annot-version=v4.1 ATGGGAAGTGTTTCGCTAGTCTCTGCAGCCCTAAGAAGGCTAGAAGGCAAGGTGGCACTGATCACTGGAGGATCAAGTGGCATAGGAGAGTCCACTGCAA GACTCTTCGTCAAACATGGAGCTAAGGTGGTAATTGCAGACATTCAAGATGAATTGGGCCACTCCGTTTGCAAGGAATTAGAACCTGAACCTGCTTCATT CATCCATTGTGATGTTACTCAAGAAAAAGATGTTGAAAACGCTGTTAATACAGCTGTTTCTAAGTATGGAAAGCTTGACATCATGTTCAACAACGCAGGT ACAGGAGGAACGCCAAAAACAAACATACTTGAAAATGACAAGGCCGAATTTGAGAAGATCATTTGTGCCAATTTAGTAGGTGCATTCTTAGGCACTAAGC ATGCAGCCCGTGTAATGATCCCTGCTCGGCGCGGTAGCATAATTACAACTGCAAGTGTTTGTGCAATAATTGGAGGAGGTTCATCACATGCCTACACTAG TTCAAAGCATGGTGTGTTAGGATTAATGAGAAACACGGCTGTGGAATTAGGACAATACGGCATCCGTGTAAATTGTGTGTCACCGTACGCGGTTCCTACC CCATTGTTTAAGAATTTCTTTAAGATGAACGACGATGAAGTTAGTTGCATTTACTCTAACCTCAAGGAAGCTGTGCTTGAAGCAGAAGACATTGCTGAGG CTGCTCTTTATTTGGGGAGTGATGAATCAAAGTATGTTAGTGGACACAATCTGGTGGTAGATGGTGGCTTCACTATTGTAAATCCAGGTTTTTGCATGTT TCCACGATCTAGCTGA
AA sequence Show only first row Show all	>Potri.005G106100.1 pacid=42802329 polypeptide=Potri.005G106100.1.p locus=Potri.005G106100 ID=Potri.005G106100.1.v4.1 annot-version=v4.1 MGSVSLVSAALRRLEGKVALITGGSSGIGESTARLFVKHGAKVVIADIQDELGHSVCKELEPEPASFIHCDVTQEKDVENAVNTAVSKYGKLDIMFNNAG TGGTPKTNILENDKAEFEKIICANLVGAFLGTKHAARVMIPARRGSIITTASVCAIIGGGSSHAYTSSKHGVLGLMRNTAVELGQYGIRVNCVSPYAVPT PLFKNFFKMNDDEVSCIYSNLKEAVLEAEDIAEAALYLGSDESKYVSGHNLVVDGGFTIVNPGFCMFPRSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G47140		AtSDR5	short-chain dehydrogenase redu...		Potri.005G106100 [exp]	0	1	Pt-CTS2.5
AT4G39950		CYP79B2	"cytochrome P450, family 79, s...		Potri.013G157400 [exp]	2.44	0.9864
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.015G032100 [exp]	3.00	0.9835	TPS1.4
AT3G25180		CYP82G1	cytochrome P450, family 82, su...		Potri.013G125300 [exp]	9.69	0.9850	Pt-CYP82.15
					Potri.001G203700 [exp]	11.53	0.9340
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125801 [exp]	15.62	0.9608
AT3G61460		BRH1	brassinosteroid-responsive RIN...		Potri.010G133700 [exp]	20.59	0.9743
AT5G65940		CHY1	beta-hydroxyisobutyryl-CoA hyd...		Potri.006G277300 [exp]	24.69	0.9698
AT4G19170		CCD4, NCED4	carotenoid cleavage dioxygenas...		Potri.009G151900 [exp]	27.71	0.9666
					Potri.010G133401 [exp]	29.08	0.9282
AT5G57520	C2H2ZnF	ATZFP2, ZFP2	zinc finger protein 2 (.1)		Potri.006G169800 [exp]	29.12	0.8769

Compare expression of checked genes

Potri.005G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.