Plant FIBer expression Database

Potri.005G106151 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G106151.1 pacid=42805468 polypeptide=Potri.005G106151.1.p locus=Potri.005G106151 ID=Potri.005G106151.1.v4.1 annot-version=v4.1
ATGGATTTAAATGCACTGGCCCAGCTTTCTGCTTTGGTAGTCGCGGTTTTAAATGCTCATGCAGGCCCTCTTGCCCTCTTAAATCCTACCCCAGACATTC
TCACCTCTCCCTCACACCTTGCTAGCCATCTTCCAAGGAAACAAAAAACCTCCCTCTCTTCCTCTCTGGTCATTTTGATCTCTTGTTATCTTGATGGAAC
TCTCCCATTTCTCTTGACAAGGCAAAGAAGGGATTGTTTACCGTGTTGA
AA sequence
>Potri.005G106151.1 pacid=42805468 polypeptide=Potri.005G106151.1.p locus=Potri.005G106151 ID=Potri.005G106151.1.v4.1 annot-version=v4.1
MDLNALAQLSALVVAVLNAHAGPLALLNPTPDILTSPSHLASHLPRKQKTSLSSSLVILISCYLDGTLPFLLTRQRRDCLPC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G106151
[exp]
0 1
AT5G49800 Polyketide cyclase/dehydrase a... Potri.004G231000
[exp]
7.74 0.8181
AT4G35070 SBP (S-ribonuclease binding pr... Potri.002G019000
[exp]
25.49 0.7992
AT3G57030 Calcium-dependent phosphotries... Potri.008G109966
[exp]
36.76 0.7974
AT1G51405 myosin-related (.1) Potri.009G052400
[exp]
37.22 0.7894
AT5G14210 Leucine-rich repeat protein ki... Potri.015G093100
[exp]
40.24 0.7745
AT1G09010 glycoside hydrolase family 2 p... Potri.013G021200
[exp]
40.98 0.7440
AT1G34245 EPF2 EPIDERMAL PATTERNING FACTOR 2,... Potri.013G116600
[exp]
43.95 0.7752
AT1G01140 PKS6, CIPK9, Sn... SNF1-RELATED PROTEIN KINASE 3.... Potri.002G177900
[exp]
65.38 0.7830
AT2G03090 ATHEXPALPHA1.3,... EXPANSIN 15, expansin A15 (.1) Potri.013G060800
[exp]
67.86 0.7740 Pt-EXP2.5,PtrEXPA11
AT4G18830 OFP ATOFP5, OFP5 ovate family protein 5 (.1) Potri.015G004300
[exp]
70.69 0.7797

Potri.005G106151 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.