Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35760 385 / 3e-133 NAD(P)H dehydrogenase (quinone)s (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028389 [exp] 353 / 2e-120 AT4G35760 327 / 4e-110 NAD(P)H dehydrogenase (quinone)s (.1) Lus10041842 [exp] 347 / 5e-117 AT4G35760 320 / 8e-107 NAD(P)H dehydrogenase (quinone)s (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07884 [poplar] [flax] VKOR Vitamin K epoxide reductase family
Representative CDS sequence Show only first row Show all	>Potri.005G106500.1 pacid=42805541 polypeptide=Potri.005G106500.1.p locus=Potri.005G106500 ID=Potri.005G106500.1.v4.1 annot-version=v4.1 ATGGCAAGTTTCCTCAACATCACATCTCCTCCGTTCTTCTCTTCAAGAACATCACTTTCTCCCTCTCCACCACCTACTCTCACTGCCCAACTAACCCAAT TCAAGAAGGGTTGGTGTTGGAAACTAAAGTGCATGCCTTCTTCAGGGCCAAGTCAAGAGACTGATTCAGAACCACCTGAAACGGCACCATCTCCTTCAAA CTCAGCTTCTTTATTGTCTTCTTCAAGTGTTTCTACTTATAATTGGTGTGCAGGTCTTGGTGGTGTTGGGTTTCTTGAAACTGCATACTTAACATTCCTC AAGCTCACAAATTCTGATGCTTTTTGCCCAATTGGTGGTGGCAACTGTGGTGATGTTCTTAGCAGTGATTATGCAGTGGTTTTTGGTGTTCCTCTTCCAT TGATAGGAATGATATCATATGGTCTAGTGGCAGCACTTGGTTTACAGTGGTCTGGAAAGAAGTTTCCCTTTGGTATCGAGGAGTCTAATGGTCGCTTGCT TTTACTTGGGTGCACTACCTCAATGGCAGTTGCTAGTGGATATTTCTTGTACATTTTGAGCACAAAGTTTTCAGGGACATCTTGCACTTACTGTTTATTG TCAGCTTTCTTGTCATTCAGCTTGTTTTTCATCACTTTAAAGGATTTTGGTTTGGAAGAGATACAAAAGTTTTTGGGTTTACAGCTATGTATAGCAAGCG TGGTGATTTTTTCATTGAACACCTCATATGCTACACTCCAACGTGCCAGCTCAAGCAGCGTGGCTGATATTAACCTGGAATATTTTACCACTGAGATAAC CACACCTTCGAGTCCTTTTGCTATATCTCTTGCAAGACATCTACAATCTACAGGAGCTAAAATGTATGGAGCTTTCTGGTGTTCACATTGCCAAGAACAA AAACAGATGTTTGGGAAGGAGGCAGCAGAACTGTTGAACTATGTGGAATGCTTCCCTAATGGATTTAGGAAAGGAACTAAGATGATAAAGGCATGTGCAG ATGCTAAACTTGAAGGATTTCCAACATGGGTGATCAATGGTCAGGTTTTGAGTGGAGATCAAGAATTGTCTGAGCTTGCGAAGGTATCTGGGTTCAAGAT TGAGGAATCCAATCAACCGAGTTAG
AA sequence Show only first row Show all	>Potri.005G106500.1 pacid=42805541 polypeptide=Potri.005G106500.1.p locus=Potri.005G106500 ID=Potri.005G106500.1.v4.1 annot-version=v4.1 MASFLNITSPPFFSSRTSLSPSPPPTLTAQLTQFKKGWCWKLKCMPSSGPSQETDSEPPETAPSPSNSASLLSSSSVSTYNWCAGLGGVGFLETAYLTFL KLTNSDAFCPIGGGNCGDVLSSDYAVVFGVPLPLIGMISYGLVAALGLQWSGKKFPFGIEESNGRLLLLGCTTSMAVASGYFLYILSTKFSGTSCTYCLL SAFLSFSLFFITLKDFGLEEIQKFLGLQLCIASVVIFSLNTSYATLQRASSSSVADINLEYFTTEITTPSSPFAISLARHLQSTGAKMYGAFWCSHCQEQ KQMFGKEAAELLNYVECFPNGFRKGTKMIKACADAKLEGFPTWVINGQVLSGDQELSELAKVSGFKIEESNQPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35760			NAD(P)H dehydrogenase (quinone...		Potri.005G106500 [exp]	0	1
AT3G48480			Cysteine proteinases superfami...		Potri.010G180300 [exp]	3.00	0.9264
AT2G43840		UGT74F1	UDP-glycosyltransferase 74 F1 ...		Potri.007G117200 [exp]	3.46	0.9490	Pt-ZOG1.9
AT2G22650			FAD-dependent oxidoreductase f...		Potri.018G112600 [exp]	6.63	0.9251
AT2G02590			unknown protein		Potri.010G034400 [exp]	7.41	0.9080
					Potri.013G069675 [exp]	7.48	0.9186
AT2G20740			Tetraspanin family protein (.1...		Potri.006G241400 [exp]	9.48	0.9175
AT5G13030			unknown protein		Potri.001G013900 [exp]	11.66	0.9049
AT1G14270			CAAX amino terminal protease f...		Potri.008G147600 [exp]	12.32	0.9455
AT2G30170			Protein phosphatase 2C family ...		Potri.001G282500 [exp]	13.41	0.9229
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	14.07	0.9448

Compare expression of checked genes

Potri.005G106500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.