Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35750 284 / 1e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT3G10210 148 / 1e-44 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) AT1G69340 66 / 2e-12 appr-1-p processing enzyme family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G014700 [exp] 261 / 1e-89 AT4G35750 296 / 3e-103 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.005G246800 [exp] 248 / 2e-84 AT4G35750 282 / 9e-98 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.006G043166 [exp] 163 / 3e-50 AT3G10210 359 / 6e-127 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Potri.010G161500 [exp] 61 / 8e-11 AT1G69340 926 / 0.0 appr-1-p processing enzyme family protein (.1) Potri.008G093100 [exp] 59 / 4e-10 AT1G69340 935 / 0.0 appr-1-p processing enzyme family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041841 [exp] 290 / 6e-101 AT4G35750 323 / 7e-114 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10028388 [exp] 280 / 6e-97 AT4G35750 313 / 5e-110 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10021230 [exp] 231 / 1e-77 AT4G35750 265 / 7e-91 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10005640 [exp] 230 / 4e-77 AT4G35750 260 / 6e-89 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10035431 [exp] 166 / 4e-51 AT3G10210 353 / 2e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10031044 [exp] 166 / 4e-51 AT3G10210 353 / 3e-124 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein (.1) Lus10030413 [exp] 67 / 4e-13 AT1G69340 917 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10037119 [exp] 62 / 4e-11 AT1G69340 966 / 0.0 appr-1-p processing enzyme family protein (.1) Lus10036809 [exp] 59 / 5e-10 AT1G69340 971 / 0.0 appr-1-p processing enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0512 [poplar] [flax] CRAL_TRIO PF13716 [poplar] [flax] CRAL_TRIO_2 Divergent CRAL/TRIO domain
Representative CDS sequence Show only first row Show all	>Potri.005G107300.1 pacid=42804812 polypeptide=Potri.005G107300.1.p locus=Potri.005G107300 ID=Potri.005G107300.1.v4.1 annot-version=v4.1 ATGTGCACTCACATTTCTCTGTCTGACCAAGAACAACTTGTTGAGAAATTGGAGATTTTCAAATTTCAAGGCAGGGATAAAAATGGCCACAAAGTCCTTC GAATTATCGGCAAATTCTTATCGGCTCGGTATTTGAGCGTGGATGCACTCAAGAATTATTTGGAGGAGAACATCTTTCCTAGGCTAAAGAAGAAGCCATT TTCGGTCTTGTACCTTCACACACAAGTACAAAAGAGTGAGGATTTTCCAGGAATCTCAGCCCTCCGATCAATCTATGATGTTATACCAATCAACGCTAGG GATAATCTCCAGGCAATTTACTTTGTCCACCCCAGCCTACAAGCCAAACTTTTCCTTGCCACGTTTGGCCGTCTTCACTTCGGCAGCAGGTTGTATGGGA AGCTAAGATATATCAATAGGATTGATTATTTATGGGACCCTATAAGGAGAAATGAAGTAAAAATCCCTGAGTTCGTTTGTGATCATGATGAAGATTTGGA GGGCCATCAGATGCTGGACTATGGGGTGGAGAGTGATCATCCTAGAGTTTGTGGTGCTCCCTTCATGGATTCTCCTGTGACCATGTACTCAACGAGGTGT ATTTAG
AA sequence Show only first row Show all	>Potri.005G107300.1 pacid=42804812 polypeptide=Potri.005G107300.1.p locus=Potri.005G107300 ID=Potri.005G107300.1.v4.1 annot-version=v4.1 MCTHISLSDQEQLVEKLEIFKFQGRDKNGHKVLRIIGKFLSARYLSVDALKNYLEENIFPRLKKKPFSVLYLHTQVQKSEDFPGISALRSIYDVIPINAR DNLQAIYFVHPSLQAKLFLATFGRLHFGSRLYGKLRYINRIDYLWDPIRRNEVKIPEFVCDHDEDLEGHQMLDYGVESDHPRVCGAPFMDSPVTMYSTRC I

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35750			SEC14 cytosolic factor family ...		Potri.005G107300 [exp]	0	1
AT5G10610		CYP81K1	"cytochrome P450, family 81, s...		Potri.017G028100 [exp]	4.35	0.8717
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028200 [exp]	5.65	0.8712	CYP81R2v2,IFS1.55
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028150 [exp]	13.74	0.8643
AT5G44005			unknown protein		Potri.014G192100 [exp]	15.29	0.8096
AT5G10600		CYP81K2	"cytochrome P450, family 81, s...		Potri.017G028450 [exp]	20.90	0.8579
AT2G39420			alpha/beta-Hydrolases superfam...		Potri.008G049000 [exp]	21.26	0.7688
AT1G68620			alpha/beta-Hydrolases superfam...		Potri.016G031500 [exp]	21.90	0.8698
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Potri.002G151700 [exp]	26.09	0.7687
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Potri.003G129100 [exp]	27.42	0.8689	Pt-CYP86.7
AT2G29150			NAD(P)-binding Rossmann-fold s...		Potri.013G026100 [exp]	28.56	0.8151	SAG13.4

Compare expression of checked genes

Potri.005G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.