Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35740 850 / 0 ATRECQ3, RECQL3 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) AT1G31360 324 / 4e-100 MED34, ATRECQ2, RECQL2 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) AT3G05740 316 / 4e-98 RECQI1 RECQ helicase l1 (.1) AT1G10930 318 / 3e-94 ATSGS1, RECQL4A ,ATRECQ4A DNA helicase (RECQl4A) (.1) AT1G60930 309 / 5e-91 RECQL4B ,ATRECQ4B RECQ helicase L4B (.1) AT1G27880 212 / 1e-57 DEAD/DEAH box RNA helicase family protein (.1) AT5G27680 166 / 1e-42 RECQSIM RECQ helicase SIM (.1) AT1G55150 79 / 5e-15 DEA(D/H)-box RNA helicase family protein (.1) AT4G00660 76 / 3e-14 ATRH8 RNAhelicase-like 8 (.1.2) AT5G63120 72 / 5e-13 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G019800 [exp] 323 / 1e-100 AT3G05740 828 / 0.0 RECQ helicase l1 (.1) Potri.003G104300 [exp] 316 / 5e-97 AT1G31360 986 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.003G015800 [exp] 306 / 7e-90 AT1G10930 1329 / 0.0 DNA helicase (RECQl4A) (.1) Potri.013G161200 [exp] 289 / 3e-85 AT1G31360 310 / 2e-93 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Potri.010G056500 [exp] 216 / 4e-59 AT1G27880 935 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Potri.005G026400 [exp] 161 / 7e-41 AT5G27680 875 / 0.0 RECQ helicase SIM (.1) Potri.003G038300 [exp] 85 / 5e-17 AT1G55150 790 / 0.0 DEA(D/H)-box RNA helicase family protein (.1) Potri.001G347100 [exp] 77 / 3e-14 AT5G14610 823 / 0.0 DEAD box RNA helicase family protein (.1.2) Potri.005G257400 [exp] 74 / 2e-13 AT1G20920 1253 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041840 [exp] 853 / 0 AT4G35740 879 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10028387 [exp] 747 / 0 AT4G35740 778 / 0.0 A. THALIANA RECQ HELICASE 3, DEAD/DEAH box RNA helicase family protein (.1.2) Lus10026219 [exp] 325 / 5e-101 AT3G05740 816 / 0.0 RECQ helicase l1 (.1) Lus10042451 [exp] 321 / 1e-99 AT3G05740 814 / 0.0 RECQ helicase l1 (.1) Lus10015467 [exp] 322 / 1e-94 AT1G10930 1288 / 0.0 DNA helicase (RECQl4A) (.1) Lus10033289 [exp] 300 / 2e-90 AT1G31360 949 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034749 [exp] 272 / 2e-80 AT1G31360 853 / 0.0 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10034434 [exp] 265 / 1e-76 AT1G31360 280 / 2e-82 ARABIDOPSIS THALIANA RECQ 2, RECQ helicase L2 (.1.2) Lus10004503 [exp] 160 / 1e-40 AT5G27680 912 / 0.0 RECQ helicase SIM (.1) Lus10036983 [exp] 128 / 2e-30 AT1G27880 344 / 7e-106 DEAD/DEAH box RNA helicase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF16124 [poplar] [flax] RecQ_Zn_bind RecQ zinc-binding
Representative CDS sequence Show only first row Show all	>Potri.005G107400.2 pacid=42804875 polypeptide=Potri.005G107400.2.p locus=Potri.005G107400 ID=Potri.005G107400.2.v4.1 annot-version=v4.1 ATGAAGAAGTCACCGTTGCCAATGGTGCAAAACACAAGCAGCAAGGATGAAAAGAGAACAAGAAAAGAAACGCTAGTGAAGCTGTTAAGATGGCATTTTG GGTATCAAGATTTTAGAGGCAAACAGTTAGAAGCCATTGAAGCTGTTTTATCAGGGAGGGATTGTTTTTGTTTGATGCCAACTGGTGGAGGGAAGTCAAT GTGTTATCAAATTCCTGCTCTTGCTAAACGTGGGATTGTTCTTGTCGTGTCTCCTTTGATTGCCTTGATGGAGAACCAAGTGATGGCCTTGAAGGAGAAA GGAATTGCAGCTGAATTTCTTTCATCGACTCAAACATCAAGTGTTAGAAATAAAATTCATGAAGATCTGGACTCTGGAAAACCATCTGTGAGGCTGCTGT ATGTAACACCAGAATTAATTGCAACACCAGGATTTATGTCGAAGCTGACAAAGATTCACACCAGAGGGTTGTTGAATCTCATTGCCATAGATGAGGCACA TTGCATTTCGTCATGGGGTCATGATTTCAGGCCTAGCTACCGTAAGCTTTCATCTTTGAGGAATCACCTTCCAGATGTACCAGTCCTGGCTTTGACAGCT ACAGCTGCTCCTAAAGTTCAGAATGATGTGATAGAGTCATTATGTCTGCAAGACCCTTTGGTTCTCAGCTCTTCTTTCAATCGTCCAAATATTTATTATG AAGTTCGATACAAAGATCTTCTGGATGATGCCTACGCTGATTTATCCTCTGTACTCAAATCTTGTGGGGATATCTGTGCAATTGTTTACTGCCTTGAACG AACAACCTGTGATGGCTTGTCTGCTCATCTTTCCAAAAATGGCATTTCCTCTGCTGCTTACCACGCTGGCTTGAATAATAAACTGCGGAGCTCAGTTTTA GATGATTGGATTTCTTCTAAAATACAAGTTGTTGTGGCCACAGTGGCTTTTGGGATGGGTATAGATAGAAAAGATGTTAGAATGGTTTGCCACTTTAACA TTCCAAAGTCAATGGAGTCCTTCTATCAAGAATCAGGTAGAGCAGGACGTGACCAGCTTCCATCCAGAAGTCTCTTGTACTATGGAGTTGATGATCACAA AAAGATGGAGTTCATTTTAAGAAATGCTGAGAACAAGAAGCTGCAGTCCTCAAGTTCAAAGGGCGAGTTGTCAAAAAAGTCCCTCACTGACTTCAATCTG ATGATTGAGTACTGTGAGGGTTCTGGATGCCGTCGGAAAAAGATTCTTGAGAGTTTTGGGGAACAGGTTTCTGCCACACTATGTAAAAAATCATGTGATG CCTGCAAACATCCAAATCTAGTTGCCAAGTATTTGGAGGAACTTACAACTAGCATTGCTCGTCAGAGAAATGGTTTTTCTCGAGTTTTTATGAGCAGGTC CACAGATATGATTGATGAAGAATTCAGAATTGATGAACAATTCTCTGAATTCTGGAATCGGGACGATGAAGGCAAAAGTTCTGAGGAAGATATATCTGAT TTTGATGATGAAACTGAAGTTGTCAAGAGCCTACCTAGATCAAGATTGTCAAGAAAATCAGGAGTAGATGAGAAGATTGAGTTGCTGCAGCGTGCGGAAG AAAATTATTATCAGAATAAAAACTTTGATAAACTGAAAAATAAAGTTGACAAGAATGCCATATCTGAAACACTGAGAGAAGCAAGCAAACAAAGATTATT AAATGCTTTGAAGCTAGCTCACAAGCGGCTTGGAATCTTAAACATTGAACTTGATACATCAGCCTCCTTCCTTGAAAATGAGTGCTACAAGAAGTACGGA AAGAGTGGAAAAACGTTCTACTATTCTCAGGTGGCAAGTACAGTAAGGTGGCTATCATCAACTACTTTGGTAGAGTTAACGAATCGGCTCGGCCCTGGCA CCCCTTCCGTCCCTGTGTCTAAAGAACATCCTCCTGAGACACCACCATCACCCTTGCTTGAGCAGAGGCCACCAGAAACTACTAACCTAAAACGCCACAG TAGCTTTCATTCACCCTTGCTTGAGCAGAAGTCACCAGAAACTACTACCCCAAGACTCGACCATACATTTCAATCAGAAACTTCGATGAATACTTCACCG TCAGAAAGTTCCAGCCTGAGTACAAAGCTGCCATCCATTCCATCCTTTTCCGAGTTTGTGAACAGCAAAAAGGAAAAAGGCAACCATGCCAATACATCAC AAAACCAATCACACATGAGACTGGAGAAGACCGGAGAGAAGAGGCTGAGGCTGCATTAA
AA sequence Show only first row Show all	>Potri.005G107400.2 pacid=42804875 polypeptide=Potri.005G107400.2.p locus=Potri.005G107400 ID=Potri.005G107400.2.v4.1 annot-version=v4.1 MKKSPLPMVQNTSSKDEKRTRKETLVKLLRWHFGYQDFRGKQLEAIEAVLSGRDCFCLMPTGGGKSMCYQIPALAKRGIVLVVSPLIALMENQVMALKEK GIAAEFLSSTQTSSVRNKIHEDLDSGKPSVRLLYVTPELIATPGFMSKLTKIHTRGLLNLIAIDEAHCISSWGHDFRPSYRKLSSLRNHLPDVPVLALTA TAAPKVQNDVIESLCLQDPLVLSSSFNRPNIYYEVRYKDLLDDAYADLSSVLKSCGDICAIVYCLERTTCDGLSAHLSKNGISSAAYHAGLNNKLRSSVL DDWISSKIQVVVATVAFGMGIDRKDVRMVCHFNIPKSMESFYQESGRAGRDQLPSRSLLYYGVDDHKKMEFILRNAENKKLQSSSSKGELSKKSLTDFNL MIEYCEGSGCRRKKILESFGEQVSATLCKKSCDACKHPNLVAKYLEELTTSIARQRNGFSRVFMSRSTDMIDEEFRIDEQFSEFWNRDDEGKSSEEDISD FDDETEVVKSLPRSRLSRKSGVDEKIELLQRAEENYYQNKNFDKLKNKVDKNAISETLREASKQRLLNALKLAHKRLGILNIELDTSASFLENECYKKYG KSGKTFYYSQVASTVRWLSSTTLVELTNRLGPGTPSVPVSKEHPPETPPSPLLEQRPPETTNLKRHSSFHSPLLEQKSPETTTPRLDHTFQSETSMNTSP SESSSLSTKLPSIPSFSEFVNSKKEKGNHANTSQNQSHMRLEKTGEKRLRLH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35740		ATRECQ3, RECQL3	A. THALIANA RECQ HELICASE 3, D...		Potri.005G107400 [exp]	0	1
AT3G29390		RIK	RS2-interacting KH protein (.1...		Potri.017G093600 [exp]	1.00	0.8619
					Potri.003G196200 [exp]	1.41	0.8466
AT3G04910		ATWNK1, ZIK4, W...	with no lysine (K) kinase 1 (....		Potri.013G036300 [exp]	2.44	0.7866
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.014G077200 [exp]	2.82	0.7981
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.013G038301 [exp]	3.16	0.7880
AT1G79030			Chaperone DnaJ-domain superfam...		Potri.011G142000 [exp]	4.89	0.7615
AT1G24120		ARL1	ARG1-like 1 (.1)		Potri.008G193500 [exp]	5.74	0.7633	ARL1.3
AT3G07530			unknown protein		Potri.004G236000 [exp]	6.70	0.7547
					Potri.004G104301 [exp]	7.48	0.7786
AT1G16650			S-adenosyl-L-methionine-depend...		Potri.007G065300 [exp]	9.53	0.7847

Compare expression of checked genes

Potri.005G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.