Plant FIBer expression Database

Potri.005G107500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76070 56 / 2e-09 unknown protein
AT1G20310 46 / 5e-06 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.002G016500
[exp]
94 / 2e-23 AT1G76070 116 / 4e-31 unknown protein
Potri.005G245600
[exp]
89 / 3e-21 AT1G76070 97 / 1e-23 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034552
[exp]
53 / 1e-08 AT1G76070 66 / 5e-13 unknown protein
Lus10005623
[exp]
51 / 1e-07 AT1G76070 116 / 2e-30 unknown protein
Lus10041856
[exp]
49 / 1e-06 AT4G35800 2541 / 0.0 RNA polymerase II large subunit (.1)
Lus10017246
[exp]
47 / 7e-06 AT5G50410 186 / 7e-55 unknown protein
Lus10021840
[exp]
43 / 1e-05 AT1G76070 59 / 1e-11 unknown protein
PFAM info
Representative CDS sequence
>Potri.005G107500.1 pacid=42804038 polypeptide=Potri.005G107500.1.p locus=Potri.005G107500 ID=Potri.005G107500.1.v4.1 annot-version=v4.1
ATGGGGAAACGAAGGAAATCAAAATTCAGTGTCCTCGCCTGTCTTCCGCAAGCAGCATCTCCTGTCACGTTCCAGAGTCCACCAACCAGCCCTCGCATGT
CCAATACTGACAGAGGTTTGTCTGGTCGGATCGTATCGCTTGTTCCAAAGGAGGCTAGAACAAAGGCTAGGAGTGGATGCTTTGATGATGCACAAGAGCC
CTCATCCCCTAAAGTTTCGTGCACGGGCAAAGTCAATAACAAAAGCAAGAAAAAACCACAAGCAACTAAGTCAGACTCTTGTCCTGAACCAACAGTACTA
ACGGTTCTCAAAGGAAAGAAACAAGGTCTGCAATCTGATACCTCTCGTGGGAGGCCGCCTGTTGCAGATAAACCTCCTTCTTTAGGTCACATGAAGCAGT
TCTCGAGCAATTGTGGCGTGTTAAGAGATTTTGATTGGAAGGCTCATGATGTTTCAGGGATGCCAGATAACTCAAATTATAGTTCATATGATGAGAAGAA
CGGAGATAAAGAGAAGGTGTTTATTGTAGTGGAAGTGGATGAAGACATTCCTAGAGAGCCAAAGAAACAAGTAGAATTGTGGAGGAGAAGAAGCTGCAGG
ACTCCTCCTGGACCTCTTCAATTGGAGAAACAAGCACGTTGTTAA
AA sequence
>Potri.005G107500.1 pacid=42804038 polypeptide=Potri.005G107500.1.p locus=Potri.005G107500 ID=Potri.005G107500.1.v4.1 annot-version=v4.1
MGKRRKSKFSVLACLPQAASPVTFQSPPTSPRMSNTDRGLSGRIVSLVPKEARTKARSGCFDDAQEPSSPKVSCTGKVNNKSKKKPQATKSDSCPEPTVL
TVLKGKKQGLQSDTSRGRPPVADKPPSLGHMKQFSSNCGVLRDFDWKAHDVSGMPDNSNYSSYDEKNGDKEKVFIVVEVDEDIPREPKKQVELWRRRSCR
TPPGPLQLEKQARC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76070 unknown protein Potri.005G107500
[exp]
0 1
AT4G13420 HAK5, ATHAK5 high affinity K+ transporter 5... Potri.001G069650
[exp]
1.41 0.9861
AT4G10500 2-oxoglutarate (2OG) and Fe(II... Potri.002G039600
[exp]
3.16 0.9858
AT5G19790 AP2_ERF RAP2.11 related to AP2 11 (.1) Potri.019G036100
[exp]
4.00 0.9756
AT2G01900 DNAse I-like superfamily prote... Potri.015G032200
[exp]
4.47 0.9845
AT1G05300 ZIP5 zinc transporter 5 precursor (... Potri.006G006600
[exp]
6.70 0.9770
AT3G05640 Protein phosphatase 2C family ... Potri.010G006200
[exp]
6.92 0.9838
AT3G21630 LYSMRLK1, CERK1 LYSM DOMAIN RECEPTOR-LIKE KINA... Potri.011G010000
[exp]
7.48 0.9834
AT5G15180 Peroxidase superfamily protein... Potri.007G122351
[exp]
9.38 0.9803
AT1G05300 ZIP5 zinc transporter 5 precursor (... Potri.006G006900
[exp]
9.38 0.9724 Pt-ZIP4.1
AT1G12940 ATNRT2.5 nitrate transporter2.5 (.1) Potri.015G081300
[exp]
10.81 0.9590 PtNrt2-6,Pt-NRT2.2

Potri.005G107500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.