Plant FIBer expression Database

Potri.005G107900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G17710 101 / 2e-28 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G107800
[exp]
132 / 1e-40 AT2G17710 117 / 6e-34 unknown protein
Potri.005G228600
[exp]
37 / 0.0007 AT1G19530 81 / 2e-20 unknown protein
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G107900.2 pacid=42802767 polypeptide=Potri.005G107900.2.p locus=Potri.005G107900 ID=Potri.005G107900.2.v4.1 annot-version=v4.1
ATGTCGACGAAAGAGAGATGCTCCCACCTTCAAAGATTCTGGGCGAGGAAGAGTGCTGTTGGTGAGAGCGTGACAAAGCAAGAGATTGCCGAGTTCTGGA
GGCAAAAACTTGACGAGGAACAGGATCACCTGCTTTATGCTATCAAGGCTGCAGCACGTCTCAGGGCTCACAATCTCTCGGAGGATGATTACAAGCTCTT
TGAAGAATCGCTGAAGGATGATGATGACATTAAAGAGAACGTCAAAAGCACAGAATATGGGAAGAACAGTGAAATGCGTTTGGGAATAAACGACTGGTGG
ACAAAGAGCAAGTATGCACACTTGAACCAACCTGCCATTGAGTCGCTGGATCCTCCCAAAAAGGCAGTCTTTTAG
AA sequence
>Potri.005G107900.2 pacid=42802767 polypeptide=Potri.005G107900.2.p locus=Potri.005G107900 ID=Potri.005G107900.2.v4.1 annot-version=v4.1
MSTKERCSHLQRFWARKSAVGESVTKQEIAEFWRQKLDEEQDHLLYAIKAAARLRAHNLSEDDYKLFEESLKDDDDIKENVKSTEYGKNSEMRLGINDWW
TKSKYAHLNQPAIESLDPPKKAVF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G17710 unknown protein Potri.005G107900
[exp]
0 1
AT2G44930 Plant protein of unknown funct... Potri.012G035001
[exp]
1.73 0.9803
AT4G31980 unknown protein Potri.003G206801
[exp]
2.00 0.9711
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.014G106600
[exp]
3.46 0.9740 COMT4,Pt-RCOMT1.6
AT2G34930 disease resistance family prot... Potri.015G025100
[exp]
4.58 0.9439
AT2G44930 Plant protein of unknown funct... Potri.012G035100
[exp]
4.89 0.9655
Potri.019G105600
[exp]
5.19 0.9570
AT3G23220 AP2_ERF ESE1 ethylene and salt inducible 1,... Potri.002G039300
[exp]
8.60 0.9369
AT1G58190 AtRLP9 receptor like protein 9 (.1.2) Potri.003G041700
[exp]
9.16 0.9507
Potri.019G109501
[exp]
11.18 0.9408
AT4G26485 Domain of unknown function (DU... Potri.011G141501
[exp]
12.80 0.8724

Potri.005G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.