Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 245 / 2e-72 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 242 / 4e-71 Malectin/receptor-like protein kinase family protein (.1) AT4G34500 229 / 8e-70 Protein kinase superfamily protein (.1) AT3G46290 237 / 1e-69 HERK1 hercules receptor kinase 1 (.1) AT4G39110 235 / 1e-68 Malectin/receptor-like protein kinase family protein (.1) AT5G59700 234 / 1e-68 Protein kinase superfamily protein (.1) AT1G61590 223 / 5e-68 Protein kinase superfamily protein (.1) AT1G30570 232 / 8e-68 HERK2 hercules receptor kinase 2 (.1) AT5G18610 224 / 5e-67 Protein kinase superfamily protein (.1.2) AT1G26970 221 / 6e-67 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G120400 [exp] 252 / 7e-75 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 250 / 3e-74 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.011G164700 [exp] 245 / 1e-72 AT1G30570 1086 / 0.0 hercules receptor kinase 2 (.1) Potri.001G467000 [exp] 244 / 4e-72 AT1G30570 1090 / 0.0 hercules receptor kinase 2 (.1) Potri.001G405500 [exp] 243 / 7e-72 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.011G128000 [exp] 243 / 8e-72 AT5G54380 1231 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.008G145900 [exp] 228 / 2e-70 AT1G24030 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 228 / 5e-70 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 227 / 6e-70 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028407 [exp] 467 / 1e-161 AT2G14510 258 / 1e-76 Leucine-rich repeat protein kinase family protein (.1) Lus10041860 [exp] 466 / 2e-161 AT2G14440 262 / 3e-78 Leucine-rich repeat protein kinase family protein (.1) Lus10038595 [exp] 246 / 5e-77 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10029187 [exp] 234 / 1e-72 AT1G24030 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10010703 [exp] 233 / 4e-72 AT1G24030 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10017478 [exp] 241 / 1e-70 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 240 / 3e-70 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10003312 [exp] 236 / 3e-69 AT3G46290 741 / 0.0 hercules receptor kinase 1 (.1) Lus10030308 [exp] 234 / 2e-68 AT3G46290 735 / 0.0 hercules receptor kinase 1 (.1) Lus10027509 [exp] 234 / 2e-68 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.005G108300.2 pacid=42804431 polypeptide=Potri.005G108300.2.p locus=Potri.005G108300 ID=Potri.005G108300.2.v4.1 annot-version=v4.1 ATGGCAGCAAAGAGCTACTATTATTTGGCAACCCAACCAACATCATTTCCAAATTCACCAGCACCGCTAATTCATGAGACCAGAATTGCTAATAATAATC GAAGGCATGATAAACATATATGGGGAGCACTGATTATTGGGATTGTAACAATATCAGTTGTTACTTCACTCTGTTTGTTTTTCAGGAGAAGACTCTTTCC AATTTTTTGGCAAAGATACTGGTTACATAAAGGAAGTTTGAAAGCTGGGACATTATCATTGAGGCGATTTCAGTTGGAGGAGTTAGAGAGGGCTACGAAG AACTTTAGTGATGATAGCTTGTTGGGGTCTGGTGCATTTGCGAATGTCTACAAAGGGACTTTTGAATTGGAGGGTACTGCTCTAGCGATCAAGAGAGACC ATGCTGAATCATACCAGAGCACCGAAGAATTTAGAAATGAAGTGAATCTGCTTTCCAAAGTAAAGCACAGAAACCTTGTTGGCTTGGTCGGATTTTGTGA ACAAACTGGAGCAAAAAGAACACAAATGTTGGTTTATGAGTATGTACCAAATGGTTCTTTGCTTGATTACATTACCGGAAAAGGAGGGAGAAGCTTAACT TGGAGGCAAAGAGTAAACATAGCCATTGGAGCAGCTAAGGGCATAGCTCATTTGCATGATGGGATCAAGCCTAGCATAATCCACCGTGATATAAAACCAA GTAACATTCTAGTAGGAGATGGTTTTGAAGCAAAAGTTTCAGATTTTGGGCTAGTGAAGATGGGACCTATTGGGGATCAATCTTATGTCAGTAGCCAGAT CAAAGGAACTCCGGGATACCTTGATCCTGCCTATTGTTCAAGCTGTCATTTAAGTCCTTTTAGTGATGTATACAGCTTTGGAGTCATACTCTTGCAGCTT GTCACTGCCCGGCCTGCAGTTGATTTAACAAGAAATCCATCAAACTACAATATAATTGAATGGGCAAGGCCTAGCTTAGAAAGTGGCAGGGTTGAAGAAA TTTTAGATGCTAATCTTCTAACAGATTCCTGCGACATGGAAATGATGCTAAAGATGGGAGAACTTGGTCTGAGATGTGTAGTGAAAAATCCTAAAGACCG GCCTACGATGACCCGGGTGTGGCAAGAGCTAGAAGAGGCCTTATATTTAGCTGATAACTTCGTCGACAAAGAACCTTCAAAGGATTATTGGAGATCATCA AGCAGTTCTCGTAGATCAATGGATCGTGGGCCTCGAAGATCATATGAAAATTCCCAGAGTTTTGTCAGCATAGATGGTGTTGGATTTCAAAGGTTTCACG TTGAGATGGATAGCATCTTTTTTCACAGCACAAGCATGAAGTGTTTAGAGGCTGCTAGTGTCAACATTGACATTGATAAGAACAATTTGAGAGGAATAAG TGAAGAGACAAGCAAAGAAGAGATCAGTTGA
AA sequence Show only first row Show all	>Potri.005G108300.2 pacid=42804431 polypeptide=Potri.005G108300.2.p locus=Potri.005G108300 ID=Potri.005G108300.2.v4.1 annot-version=v4.1 MAAKSYYYLATQPTSFPNSPAPLIHETRIANNNRRHDKHIWGALIIGIVTISVVTSLCLFFRRRLFPIFWQRYWLHKGSLKAGTLSLRRFQLEELERATK NFSDDSLLGSGAFANVYKGTFELEGTALAIKRDHAESYQSTEEFRNEVNLLSKVKHRNLVGLVGFCEQTGAKRTQMLVYEYVPNGSLLDYITGKGGRSLT WRQRVNIAIGAAKGIAHLHDGIKPSIIHRDIKPSNILVGDGFEAKVSDFGLVKMGPIGDQSYVSSQIKGTPGYLDPAYCSSCHLSPFSDVYSFGVILLQL VTARPAVDLTRNPSNYNIIEWARPSLESGRVEEILDANLLTDSCDMEMMLKMGELGLRCVVKNPKDRPTMTRVWQELEEALYLADNFVDKEPSKDYWRSS SSSRRSMDRGPRRSYENSQSFVSIDGVGFQRFHVEMDSIFFHSTSMKCLEAASVNIDIDKNNLRGISEETSKEEIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.005G108300 [exp]	0	1
AT2G40070			unknown protein		Potri.010G177000 [exp]	1.41	0.9699
AT3G21420		LBO1	LATERAL BRANCHING OXIDOREDUCTA...		Potri.010G201000 [exp]	3.16	0.9577
AT4G20860			FAD-binding Berberine family p...		Potri.019G063400 [exp]	3.31	0.9196
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.001G069948 [exp]	5.47	0.9436
AT1G78830			Curculin-like (mannose-binding...		Potri.011G066200 [exp]	6.92	0.9347
AT1G54830	CCAAT	NF-YC3	"nuclear factor Y, subunit C3"...		Potri.001G106900 [exp]	7.54	0.9105
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038000 [exp]	9.16	0.9079
AT4G35220			Cyclase family protein (.1)		Potri.001G301700 [exp]	12.40	0.9331
AT1G11330			S-locus lectin protein kinase ...		Potri.011G038401 [exp]	12.64	0.9348
AT3G03450	GRAS	RGL2	RGA-like 2 (.1)		Potri.010G143500 [exp]	13.74	0.9229

Compare expression of checked genes

Potri.005G108300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.