Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51370 646 / 0 Protein phosphatase 2C family protein (.1.2) AT5G66080 634 / 0 Protein phosphatase 2C family protein (.1) AT4G38520 632 / 0 Protein phosphatase 2C family protein (.1.2) AT3G12620 546 / 0 Protein phosphatase 2C family protein (.1.2) AT3G55050 511 / 0 Protein phosphatase 2C family protein (.1.2) AT5G02760 434 / 5e-152 Protein phosphatase 2C family protein (.1) AT3G17090 425 / 2e-148 Protein phosphatase 2C family protein (.1.2) AT4G33920 408 / 1e-141 Protein phosphatase 2C family protein (.1) AT5G06750 401 / 1e-138 Protein phosphatase 2C family protein (.1.2.3) AT3G16560 152 / 2e-41 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G061100 [exp] 766 / 0 AT3G51370 590 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.004G177100 [exp] 710 / 0 AT4G38520 608 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.009G137400 [exp] 708 / 0 AT4G38520 657 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.008G046900 [exp] 556 / 0 AT3G12620 543 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G214700 [exp] 554 / 0 AT3G12620 542 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G082800 [exp] 489 / 6e-174 AT3G12620 502 / 4e-179 Protein phosphatase 2C family protein (.1.2) Potri.008G104300 [exp] 450 / 3e-158 AT3G17090 568 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.010G146700 [exp] 447 / 3e-157 AT3G17090 554 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.016G045600 [exp] 423 / 2e-147 AT5G06750 578 / 0.0 Protein phosphatase 2C family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041861 [exp] 697 / 0 AT3G51370 630 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10025076 [exp] 651 / 0 AT4G38520 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10024008 [exp] 645 / 0 AT4G38520 605 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10027825 [exp] 630 / 0 AT4G38520 586 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10005054 [exp] 628 / 0 AT4G38520 582 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10040346 [exp] 569 / 0 AT3G12620 616 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10023470 [exp] 566 / 0 AT3G12620 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10030302 [exp] 550 / 0 AT3G12620 597 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10001976 [exp] 483 / 9e-172 AT3G12620 524 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10028408 [exp] 480 / 3e-170 AT3G51370 457 / 5e-163 Protein phosphatase 2C family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.005G108500.4 pacid=42805574 polypeptide=Potri.005G108500.4.p locus=Potri.005G108500 ID=Potri.005G108500.4.v4.1 annot-version=v4.1 ATGTTATCAAGGTTGATAAACTTTTTGAGGGCCTGCTGGCTGCCATCCTCGGACCGTTACGTTCACACAGGTTCGGAAGCAGCTGGCCGGCAAGATGGGC TACTTTGGTACAAAGACACCGGACAGCATATGAATGGTGAATTCTCTATGGCTGTTGTGCAGGCCAATAATTTACTTGAGGATCAAAGTCAGATTGAGTC AGGTCCGTTGAGCACTCTTGATTCTGGTCCTTATGGCACGTTTGTGGGAATATATGATGGTCATGGTGGGCCGGAGACATCACGTTATGTCAATGATCAT CTCTTCCAGCATCTAAAGAGATTCACCTCTGAACAACAATCCATGTCTGTGGATGTGATTCGGAAAGCATACCAAGCAACTGAAGAGGGATTTCTTTCTC TTGTCACCAAGCAGTGGCCTATGAAACCTCAAATTGCAGCTGTTGGATCTTGCTGTCTAGTGGCCGTGATTTGTGGCGGTATCCTCTACATTGCCAACCT TGGTGATTCCCGAGCTGTCCTTGGGAGGCTTGTCAAGGCAACTGGAGAGGTTCTTGCCATCCAGCTGTCATCAGAGCATAATGTGGCAATAGAATCTGTC AGACAGGAGATGCATTCTTTGCATCCTGATGATTCACAAATTGTGGTTTTGAAGCATAACGTATGGCGTGTGAAGGGCTTGATACAGATTTCTAGATCTA TTGGCGATGTATATCTAAAGAAGGCTGAATTCAACAGAGCGCCGCTGTATGCAAAGTTCCGTCTTCGTGAACCTTTTAAGAGGCCTATTTTAAGCTCTGA ACCTTCAATTTCTGTGCATGAACTTCAACCTCATGATCAGTTTCTGATATTTGCTTCTGATGGGCTGTGGGAGCACCTTAGCAATCAAGAAGCAGTTGAT ATAGTTCAAAATCATCCCCGCAATGGAATTGCTCGAAGGCTCATAAAAGCTGCATTGCAAGAAGCTGCTAAGAAAAGAGAAATGAGATACTCGGACTTGA AGAAAATTGACCGTGGTGTCCGTCGGCATTTCCATGATGACATCACAGTAGCAGTTGTATTTCTTGATGCAAATCTTGTGAGCAGAGCTAGCACAGTCAA AGGGCCTTCTGTCTCTGTCAGGGGAGGTGGGATTCACCTACCTGCAAAAACCCTAGTCCCCTGTGCCACTCCAATGGAGATTAATAGCACTTAA
AA sequence Show only first row Show all	>Potri.005G108500.4 pacid=42805574 polypeptide=Potri.005G108500.4.p locus=Potri.005G108500 ID=Potri.005G108500.4.v4.1 annot-version=v4.1 MLSRLINFLRACWLPSSDRYVHTGSEAAGRQDGLLWYKDTGQHMNGEFSMAVVQANNLLEDQSQIESGPLSTLDSGPYGTFVGIYDGHGGPETSRYVNDH LFQHLKRFTSEQQSMSVDVIRKAYQATEEGFLSLVTKQWPMKPQIAAVGSCCLVAVICGGILYIANLGDSRAVLGRLVKATGEVLAIQLSSEHNVAIESV RQEMHSLHPDDSQIVVLKHNVWRVKGLIQISRSIGDVYLKKAEFNRAPLYAKFRLREPFKRPILSSEPSISVHELQPHDQFLIFASDGLWEHLSNQEAVD IVQNHPRNGIARRLIKAALQEAAKKREMRYSDLKKIDRGVRRHFHDDITVAVVFLDANLVSRASTVKGPSVSVRGGGIHLPAKTLVPCATPMEINST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51370			Protein phosphatase 2C family ...		Potri.005G108500 [exp]	0	1
AT1G30755			Protein of unknown function (D...		Potri.005G240300 [exp]	3.46	0.9037
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	5.83	0.8967
AT2G29640		JOSL	JOSEPHIN-like protein (.1)		Potri.001G249400 [exp]	10.19	0.8740
AT5G65110		ATACX2, ACX2	acyl-CoA oxidase 2 (.1.2)		Potri.007G090400 [exp]	11.31	0.8938
AT1G12970		PIRL3	plant intracellular ras group-...		Potri.010G046500 [exp]	11.87	0.8943
AT1G07570		APK1A	Protein kinase superfamily pro...		Potri.008G056400 [exp]	12.44	0.8900
AT4G17900			PLATZ transcription factor fam...		Potri.003G092800 [exp]	14.28	0.8750
AT1G25520			Uncharacterized protein family...		Potri.008G117900 [exp]	15.23	0.8841
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	16.30	0.8733
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	20.85	0.8726

Compare expression of checked genes

Potri.005G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.