Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35870 1048 / 0 early-responsive to dehydration stress protein (ERD4) (.1) AT1G62320 47 / 7e-05 ERD (early-responsive to dehydration stress) family protein (.1) AT1G11960 45 / 0.0002 ERD (early-responsive to dehydration stress) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063700 [exp] 1191 / 0 AT4G35870 1089 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Potri.002G113800 [exp] 46 / 0.0001 AT1G58520 827 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028409 [exp] 1082 / 0 AT4G35870 1217 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10041862 [exp] 1045 / 0 AT4G35870 1139 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10015551 [exp] 47 / 5e-05 AT4G22120 1183 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10020032 [exp] 47 / 6e-05 AT4G22120 1186 / 0.0 ERD (early-responsive to dehydration stress) family protein Lus10002133 [exp] 47 / 7e-05 AT1G32090 1136 / 0.0 early-responsive to dehydration stress protein (ERD4) (.1) Lus10000660 [exp] 44 / 0.0004 AT4G02900 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10028000 [exp] 44 / 0.0007 AT4G02900 1116 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.005G108600.1 pacid=42803048 polypeptide=Potri.005G108600.1.p locus=Potri.005G108600 ID=Potri.005G108600.1.v4.1 annot-version=v4.1 ATGAACTACCCTCTATCTCCACCACCCTCCGGCGGAGACACCGTTATACCCGACCCATGGTACGGAAACATCCAATATCTTCTTAACATCTCAACAATCG GTCTCTTCTTTTGCATCTTTATCTTCCTCTTCGCCAAGCTCCGCAGCGACCATCGCCGCATGCCTGGCTTCTCCGCCTTAGCCACCAAACTCCTCGCCGT ATGGCACGCTACCGGCCGTGAAATCGCCCTTCACTGTGGTGCTGACGCTGCCCAGTTCCTTATAATTGAAGGTGGAAGCTTTGTTGTTGTTTTGTCAATT GGGGTTTTATCAATTTGTGTTTTGCTTCCTTTAAATATGTATGGAGGGAGTCAAGTTATAAACGATGAGTTTTCAAAGACTACTATTAATCATATTGAGA AAGGTTCAAGCTTTCTTTGGATTCATTTTGTTTTCGTTGTTATTGTTGTGCTTTTAGCTCATTTTGGTATGTCTTTGATTGAAAAGAGGCTTAAAGTCAC TAGATTTAGAGATGGGAATGGGAACTTAAGTGACCCAAATGCGAATTCTATTGCTATTTTTACTATTATGGTTCAAGGATTGCCTAAAAGTATAGGGGAT GATAGGAGGGTTTTACAAGAGTATTTTCAGCATTGGTATCCTGGTAAGATTTATAAAGTTATTATGCCTATGGATTTGTGTGCATTGGATGTTTTAGCGA CGGAATTGGTTAGAGTTAGGGATGAAATTACTTGGTTGGTTGCAAAAATTGACTCGAGGCGTTTGCCTGAAGATAATGAGGGGGTTGGTGGTGGAGAGGG GTTTTGCGAGCAGTTGCAAGGTGGGGTGGTTTGGCTGTGGAGAAATGTGAAGAATTGGTGGGGTAAGATGATGGATAAGTTGGGGTATACAGATGAAGAG GAGTTGAGGAGATTACAAGAATTGAGGGTGGAGCTGGAGACGGAGTTGGCAGAGTATAAAGAAGGTCGTGCGCCAAGTGCTGGAGTTGCGTTTGTGATAT TTAAGGATGTTTATACAGCTAATAAAGCTGTTCAGGATTTTCGGAATGAGAAGAAGAGGCGGGTCGGTAAGTTCTCTTCTGTCATGGAGTTGAGGTTGCA GAGGAACCAGTGGAGAGTGGAACGAGCTCCATTGGCAGCAGATATTTACTGGAATCATTTGGGGTCGTCAAAGTTGTCTCTGAGGTTGAGGAGATTGTTT GTGAACACGTGCTTGCTGTTAATGCTTTTATTCTTTAGCTCTCCTCTTGCTGTGATAAGTGCTTTGAATAGTGCTGGGCGAATTATTGATGCAGAAGCTA TGGATAATGCACAATCATGGTTGGATTGGGTACAGAGTTCCAGCTGGTTTGCGTCCTTAATCTTCCAGTTCCTGCCAAATCTTATTATCTTTGTGAGCAT GTATATAATAGTTCCATTGGTTCTCTCTTATATGTCCAAGTTTGAACGTCATCTAACTGTCTCTGGGGAGCAAAGAGCTGCGCTTTTGAAGATGGTTTGT TTCTTCCTTGTAAACCTCATTCTGTTGAGAGCTCTGGTTGAGTCTTCTTTGGAAGGTACAATCCTAAAAATGGGTAGATGTTATTTGGATGGAGAAGACT GCAAGAGGATCGAGCAATACATGAGTGCATCATTTCTGTCAAGATCGTGTCTCTCTTCACTTGCATTTCTAATCACAAGTACTTTCTTGGGTATATCTTA TGATCTATTGGCTCCTATCCCATGGATAAAGAAGAAGATTCAGAAGTATAGGAAGAATGACATGCTCCAGCTGGTGCCTGAGCAGAGTGAAGAGTACCCT TTGGTAGATCAAGCCATAGATGCTCTTCAGAGACCACTGATGCCTGATAATATGTTTGATTCTCCCCGGTCAAATGTAATTGATGAAGAGGGACAAGATC TCTCTGTTTATCCAGTCAGCAGAACCTCTCCCATTCCCAAGCAGACATTTGATTTTGCTCAATATTATGCATTTAATTTGACAATATTCACACTGACCTT GATATATTCATCATTTGCTCCGCTCGTGGTCCCTGTTGGTGCAGTTTACTTTGGGTATAGGTATGTGGTGGACAAGTACAACTTTCTGTTTGTATATAGA GTTCGGGGTTTTCCTGCTGGAAATGATGGGAGGTTGATGGATACTGTATTGTGTATCATGCGTTTCTCTGTTGATTTATTCCTTCTATCAATGCTTCTGT TCTTCTCGGTTCATGGTGATTCCACAAAGTTGCAAGCCATTTTCACACTTGGAATATTAATAGTGTACAAATTATTACCTTCTGATAATGATAGTTTTCA GCCAGCTCTTTTGGAAGGTATACAAGCTGTTGACAGCATTGTAGATGGACCCATTGATTACGAGGTATTCTCACAACCCAGGTTTGACTGGGATTGA
AA sequence Show only first row Show all	>Potri.005G108600.1 pacid=42803048 polypeptide=Potri.005G108600.1.p locus=Potri.005G108600 ID=Potri.005G108600.1.v4.1 annot-version=v4.1 MNYPLSPPPSGGDTVIPDPWYGNIQYLLNISTIGLFFCIFIFLFAKLRSDHRRMPGFSALATKLLAVWHATGREIALHCGADAAQFLIIEGGSFVVVLSI GVLSICVLLPLNMYGGSQVINDEFSKTTINHIEKGSSFLWIHFVFVVIVVLLAHFGMSLIEKRLKVTRFRDGNGNLSDPNANSIAIFTIMVQGLPKSIGD DRRVLQEYFQHWYPGKIYKVIMPMDLCALDVLATELVRVRDEITWLVAKIDSRRLPEDNEGVGGGEGFCEQLQGGVVWLWRNVKNWWGKMMDKLGYTDEE ELRRLQELRVELETELAEYKEGRAPSAGVAFVIFKDVYTANKAVQDFRNEKKRRVGKFSSVMELRLQRNQWRVERAPLAADIYWNHLGSSKLSLRLRRLF VNTCLLLMLLFFSSPLAVISALNSAGRIIDAEAMDNAQSWLDWVQSSSWFASLIFQFLPNLIIFVSMYIIVPLVLSYMSKFERHLTVSGEQRAALLKMVC FFLVNLILLRALVESSLEGTILKMGRCYLDGEDCKRIEQYMSASFLSRSCLSSLAFLITSTFLGISYDLLAPIPWIKKKIQKYRKNDMLQLVPEQSEEYP LVDQAIDALQRPLMPDNMFDSPRSNVIDEEGQDLSVYPVSRTSPIPKQTFDFAQYYAFNLTIFTLTLIYSSFAPLVVPVGAVYFGYRYVVDKYNFLFVYR VRGFPAGNDGRLMDTVLCIMRFSVDLFLLSMLLFFSVHGDSTKLQAIFTLGILIVYKLLPSDNDSFQPALLEGIQAVDSIVDGPIDYEVFSQPRFDWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35870			early-responsive to dehydratio...		Potri.005G108600 [exp]	0	1
AT3G12050			Aha1 domain-containing protein...		Potri.016G060100 [exp]	1.00	0.8897
AT3G12050			Aha1 domain-containing protein...		Potri.006G194400 [exp]	2.44	0.7848
AT5G63610		HEN3, CDKE;1, C...	HUA ENHANCER 3, cyclin-depende...		Potri.001G088000 [exp]	3.16	0.7449	Pt-HEN3.1
AT4G02720			unknown protein		Potri.005G210900 [exp]	3.74	0.8122
AT1G18580		GAUT11	galacturonosyltransferase 11 (...		Potri.012G064500 [exp]	15.81	0.6979
AT5G19900			PRLI-interacting factor, putat...		Potri.001G011800 [exp]	18.43	0.7741
AT4G12400		Hop3	Hop3, stress-inducible protein...		Potri.001G119500 [exp]	19.23	0.7685	STI.2
AT5G03250			Phototropic-responsive NPH3 fa...		Potri.008G038600 [exp]	23.36	0.7302
AT2G38480			Uncharacterised protein family...		Potri.016G128200 [exp]	26.72	0.7617
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Potri.012G109100 [exp]	26.72	0.7094

Compare expression of checked genes

Potri.005G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.