Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17760 514 / 2e-179 Eukaryotic aspartyl protease family protein (.1) AT4G35880 431 / 1e-146 Eukaryotic aspartyl protease family protein (.1) AT3G51330 416 / 2e-140 Eukaryotic aspartyl protease family protein (.1) AT3G51350 389 / 4e-130 Eukaryotic aspartyl protease family protein (.1) AT3G51340 373 / 5e-124 Eukaryotic aspartyl protease family protein (.1) AT3G51360 371 / 1e-123 Eukaryotic aspartyl protease family protein (.1) AT5G10080 283 / 6e-89 Eukaryotic aspartyl protease family protein (.1) AT5G22850 139 / 1e-35 Eukaryotic aspartyl protease family protein (.1) AT2G36670 138 / 4e-35 Eukaryotic aspartyl protease family protein (.1.2) AT3G02740 135 / 2e-34 Eukaryotic aspartyl protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063800 [exp] 455 / 6e-156 AT4G35880 696 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.005G079900 [exp] 288 / 1e-90 AT5G10080 538 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.002G092100 [exp] 265 / 5e-82 AT5G10080 474 / 3e-163 Eukaryotic aspartyl protease family protein (.1) Potri.001G213600 [exp] 144 / 2e-37 AT5G22850 704 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.009G001700 [exp] 144 / 3e-37 AT5G22850 711 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G118800 [exp] 138 / 3e-35 AT2G36670 585 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Potri.014G146400 [exp] 134 / 8e-34 AT1G05840 758 / 0.0 Eukaryotic aspartyl protease family protein (.1) Potri.006G232600 [exp] 127 / 1e-31 AT5G10770 438 / 1e-150 Eukaryotic aspartyl protease family protein (.1) Potri.019G054900 [exp] 126 / 3e-31 AT3G02740 572 / 0.0 Eukaryotic aspartyl protease family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028411 [exp] 575 / 0 AT2G17760 527 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041865 [exp] 523 / 0 AT2G17760 523 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10028410 [exp] 430 / 4e-145 AT4G35880 672 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10041864 [exp] 417 / 1e-141 AT4G35880 646 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10019678 [exp] 268 / 4e-83 AT5G10080 567 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10016434 [exp] 253 / 5e-78 AT5G10080 515 / 1e-180 Eukaryotic aspartyl protease family protein (.1) Lus10014391 [exp] 137 / 1e-34 AT2G36670 598 / 0.0 Eukaryotic aspartyl protease family protein (.1.2) Lus10021485 [exp] 135 / 4e-34 AT1G05840 723 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10021397 [exp] 126 / 4e-31 AT5G22850 677 / 0.0 Eukaryotic aspartyl protease family protein (.1) Lus10035556 [exp] 128 / 5e-31 AT2G36670 623 / 0.0 Eukaryotic aspartyl protease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0129 [poplar] [flax] Peptidase_AA PF14541 [poplar] [flax] TAXi_C Xylanase inhibitor C-terminal
Representative CDS sequence Show only first row Show all	>Potri.005G108700.2 pacid=42803455 polypeptide=Potri.005G108700.2.p locus=Potri.005G108700 ID=Potri.005G108700.2.v4.1 annot-version=v4.1 ATGGCGACCCTTTTCAGTTATGCTCATTCTTTTCATGTTCGTCACCACAAGTTTCCATTTTTGTTTTTGCTGTTCTTGTTTGTGCTGATAGAAAGATGTT CTGGGTTTGGAACATTCGGTTTTGATATTCATCACCGGTTTTCTGACCCGGTTAAAGGGATGTTTGGTGTTGATGGATTGTTGCCAGTGAAAGATAGTGT TCCATATTTTCAAGTTATGGCTCAACGTGATAGAGTTATTCATGGCCGTAGATTGGCTACTAGTACTGGCGGTGATAATAAAAATAATAAAACACTACTT ACTTTCTATTACGGGAACGAGACTTATCGGATTGATGGTTTGGGATTTTTACATTATGCTAATGTTTCGGTTGGAACACCAAGTGTGTCATTTCTTGTGG CCCTAGACACTGGAAGTAACCTCTTGTGGTTGCCATGTGATTGTTCCAGTTGTGTGCATAGCCTAAGATCACCATCAGGAACGGTAGACCTCAATATCTA CAGTCCGAATACATCCTCAACAAGCGAAAAGGTCCCTTGCAACAGCACCTTGTGCTCACAAACACAGCGTGATCGATGCCCTAGTGATCAGAGCAATTGT CCTTATCAAGTTGTATATCTTTCTAATGGCACTTCGACAACTGGGTACTTTGTACAGGATTTATTGCACCTGATCAGCGATGATAGTCAATCAAAAGCTG TTGATGCAAAAATTACTTTTGGTTGTGGTAAAGTTCAAACGGGTTCTTTTTTGACTGGTGGAGCTCCCAATGGCTTGTTTGGACTTGGCATGTCTAATAT ATCTGTGCCTAGTACTTTGGCACATAATGGATATACTTCTGGTTCATTTTCCATGTGTTTTAGCCCTAATGGGATTGGTAGAATCAGTTTTGGTGACAAA GGAAGCACAGGCCAAGGAGAAACGTCTTTCAATCAAGGGCAACCACGCAGTTCGCTTTACAACATCAGCATCACTCAAACAAGTATTGGTGGACAAGCTA GTGATCTTGTTTATAGTGCAATTTTCGATTCCGGTACCTCATTTACATACCTGAATGATCCAGCTTATACACTTATAGCGGAGAGTTTCAATAAGCTGGT AAAGGAAACACGTCGCTCATCTACTCAAGTCCCATTTGATTATTGTTATGATATAAGTGCTAATCAAACTGAGCTGACAATTCCCGCAGTGACTCTAGTA ATGAGCGGTGGAGACTACTTTAACATAACAGACCCCATAGTACTAGTTCAACTTGCGGATGGTTCAGCTGTATATTGTCTCGGTATGATCAAGAGTGGAG ATGTGAACATCATTGGACAAAATTTCATGACTGGTCATCGCATAGTTTTCGATCGTGAGAGGATGATTTTGGGTTGGAAGCCATCTAACTGTTATGATAA CATGGATACCAACACTCTGGCTGTATCCCCAAATACTGCAGTACCTCCTGCTACTGCAGTTAACCCAGAAGCCAAACAAATACCAGCATCATCACCTCCC GGTGGGAGTCATTCACCACGGTCCAAACCGTTTAATTTCACATTAATGATGACACTAGCTCTATTCTTTGCTATTGTTTGA
AA sequence Show only first row Show all	>Potri.005G108700.2 pacid=42803455 polypeptide=Potri.005G108700.2.p locus=Potri.005G108700 ID=Potri.005G108700.2.v4.1 annot-version=v4.1 MATLFSYAHSFHVRHHKFPFLFLLFLFVLIERCSGFGTFGFDIHHRFSDPVKGMFGVDGLLPVKDSVPYFQVMAQRDRVIHGRRLATSTGGDNKNNKTLL TFYYGNETYRIDGLGFLHYANVSVGTPSVSFLVALDTGSNLLWLPCDCSSCVHSLRSPSGTVDLNIYSPNTSSTSEKVPCNSTLCSQTQRDRCPSDQSNC PYQVVYLSNGTSTTGYFVQDLLHLISDDSQSKAVDAKITFGCGKVQTGSFLTGGAPNGLFGLGMSNISVPSTLAHNGYTSGSFSMCFSPNGIGRISFGDK GSTGQGETSFNQGQPRSSLYNISITQTSIGGQASDLVYSAIFDSGTSFTYLNDPAYTLIAESFNKLVKETRRSSTQVPFDYCYDISANQTELTIPAVTLV MSGGDYFNITDPIVLVQLADGSAVYCLGMIKSGDVNIIGQNFMTGHRIVFDRERMILGWKPSNCYDNMDTNTLAVSPNTAVPPATAVNPEAKQIPASSPP GGSHSPRSKPFNFTLMMTLALFFAIV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17760			Eukaryotic aspartyl protease f...		Potri.005G108700 [exp]	0	1
AT5G03760		ATCSLA9, RAT4, ...	RESISTANT TO AGROBACTERIUM TRA...		Potri.010G234100 [exp]	1.00	0.8967	MANS.2
AT4G04960			Concanavalin A-like lectin pro...		Potri.011G053100 [exp]	3.00	0.8290
AT5G52340		ATEXO70A2	exocyst subunit exo70 family p...		Potri.016G071000 [exp]	5.83	0.8297
AT1G23160			Auxin-responsive GH3 family pr...		Potri.014G136800 [exp]	6.00	0.7970
AT2G29590			Thioesterase superfamily prote...		Potri.009G042100 [exp]	6.24	0.7932
AT1G73640		AtRABA6a	RAB GTPase homolog A6A (.1)		Potri.015G039700 [exp]	6.32	0.8099
AT4G29950			Ypt/Rab-GAP domain of gyp1p su...		Potri.006G076000 [exp]	6.63	0.7424
AT2G23810		TET8	tetraspanin8 (.1)		Potri.018G099800 [exp]	6.70	0.7890
AT5G11070			unknown protein		Potri.003G070750 [exp]	7.74	0.8223
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Potri.002G132900 [exp]	8.48	0.8217

Compare expression of checked genes

Potri.005G108700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.