Plant FIBer expression Database

Potri.005G108800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G01160 335 / 2e-104 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041866
[exp]
367 / 3e-116 AT3G01160 504 / 2e-169 unknown protein
Lus10028412
[exp]
365 / 1e-115 AT3G01160 496 / 2e-166 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF08159 NUC153 NUC153 domain
Representative CDS sequence
>Potri.005G108800.1 pacid=42804424 polypeptide=Potri.005G108800.1.p locus=Potri.005G108800 ID=Potri.005G108800.1.v4.1 annot-version=v4.1
ATGGGTTCGAAAAAGAAGAGCAAGAGCAAAAACGAGATGATCGATGATCCACGGTTTGCATCCGTACACACAGACCCGAGGTTTCAGAGAGTACCGAAGA
GAGAGTCGAAAGTGACAATTGACTCTCGGTTCAATCGTATGTTCACTGATAAGAATTTTGGTACATCGTCTGCTCCGGTAGATAAACGAGGCAGACCTAA
GAGGCAAAAAACTGACAGTAGTCTTCGTCATTACTACCGAATCGAAGAAGAAGATACGAAAGATGCAAAGAAGAAGAGAAAAGATGAGGTTTTGAGCAGC
GAAGAAGAAGAAGAAGAAGGTTTGAAGAAGAGGAAAAGAAAAGAAGAGGTTTTGAGTAGTGAAGAGGAGGATGAGGAGGAAGAGAGTGGGAGTGATGAAT
TAGAGGATTTGGAGACGGAGAGTGATGATGATGTGGGTGGAAGTGAAGAGGAGGAGACGAGTAGTAGTAGTAGTAGTAGTAGTGATGAGGAGGAGGAGGA
TATGGAGAATGTGGAGGTGGAAAATGTACCAGTAATTGAAGAAGGAACGCGGAGGCTTGCTGTTGTTAATATGGATTGGAGGCATGTCAGGGCGGTTGAC
TTATTCGTTGTATTACGCTCATTTCTTCCAAAAGGAGGACAAATTTTGTCTGTCAGTGTCTACCCATCTGAATTTGGACTTCAGCGTATGAAAGAGGAAG
AAGTCCGTGGCCCTGTTGGCTTATTCGATGATGAAAATGAGAAAAGCGATGAAGATGATGATGACAATGATGAGATTGACTATGACAAGCTGCGTGCTTA
TGAGAAAAGTAGGCTAAGGTACTACTATGCTGTGGTGGAATGTGATTCAGTTGCAACAGCAGATTATCTTTACAAATCTTGTGATGGAGTTGAGTTTGAA
AGATCTTCCAATGTGCTTGATCTCAGATTTATTCCTGACTCTATGGATTTTAAACACCCACCTCGTGATGTTGCCACAGAGGCGCCTTTGGGCTATGAGG
GGCTGGATTTCCATACTAAAGCACTGCAGCACAGTAACATTCCTGTTTCTTGGGATGAAGATGAACCACAGCGTGTGAAGACCTTGAAACAAAAATTTAA
TGCTGACCAGCTAGCTGAATTGGAGTTGAAGGAGTTTCTAGCTTCTGATGAGAGTGAAACTGACAATGATGAAGCTGATAATGACATGGAAGATGAATCA
GATAAAAAGCATAAGAAACGAGACAAGTACCGTGCTTTAATCCAGTCTGGTGATGGTTCAGATGAAGACCAAGAGGAGGGTCAGGATATGGAGGTTACTT
TCAATACTGGCTTAGAGGATTTAAGCAAGCGTATCCTAGAAAAGAAGGATAAAAAATCAGAAACTGTTTGGGAGGCATATCTCAGGAAAAGGCGTGAGAA
AAAGAAGGCTCGAAAAAATCAATCCAAGTATTCTTCAGAAGAGGACAGTAGTGATACTGATGAAGAAGGAATGGAAGGGATAGAACAACCAGATGACTTC
TTTATTGAAGAGCCATCAGTCAAAAAAGTTAACAGCAAGGACTACCAAGGTAAGAAAAACAAAGAAGAAAAGCAACTTCAGGATACAGATAGGGAGGCAG
AGGCAAGCAAAGCAGAGCTCGAGTTACTACTTGCTGATGATAAGGGGGGCAAAAAAGGTCTGAAGGGATATAATTTAAAACCTAAAAAGGCAAAAGGGAA
AAAGGGAAAAGAAGTTCCTGATGAGGACAAAATACCCACTTCTAATTTGGATGACCCTCGGTTTTCTGCTCTTTTCACTTCACCTCTCTTTGCATTGGAT
CCCACAGATCCACAGTTCAAAAGGAGTGCAGTCTATGCAAGGCAGCTGGCACTGAAACCACAGAAGAGTGGTGAGCAACAATTGGTGGAAGGAGAGAATG
AGAAACAGGCTGAAAAAGCTCAGTTGCTATCTGATGATCCTGCAATGGACAGAAATGAGTATATGATATCCGATGGTTTGCCAGAAAGGAAAGAGAAGTA
CGAGTTATCAACATTGGTAAGATCCATCAAGATGAAGTCCAAGCAAGTTCAGTCGTCCTCCAACACCAAGGATAAACAATTGCAGCCTAAAGGGTTGAAA
GAAACGGAGAAGCCTGAGCTCTCAACCTTGGTTCAATCAGCAAAGAAGGCCAAAGTTTTGAAAAAATGA
AA sequence
>Potri.005G108800.1 pacid=42804424 polypeptide=Potri.005G108800.1.p locus=Potri.005G108800 ID=Potri.005G108800.1.v4.1 annot-version=v4.1
MGSKKKSKSKNEMIDDPRFASVHTDPRFQRVPKRESKVTIDSRFNRMFTDKNFGTSSAPVDKRGRPKRQKTDSSLRHYYRIEEEDTKDAKKKRKDEVLSS
EEEEEEGLKKRKRKEEVLSSEEEDEEEESGSDELEDLETESDDDVGGSEEEETSSSSSSSSDEEEEDMENVEVENVPVIEEGTRRLAVVNMDWRHVRAVD
LFVVLRSFLPKGGQILSVSVYPSEFGLQRMKEEEVRGPVGLFDDENEKSDEDDDDNDEIDYDKLRAYEKSRLRYYYAVVECDSVATADYLYKSCDGVEFE
RSSNVLDLRFIPDSMDFKHPPRDVATEAPLGYEGLDFHTKALQHSNIPVSWDEDEPQRVKTLKQKFNADQLAELELKEFLASDESETDNDEADNDMEDES
DKKHKKRDKYRALIQSGDGSDEDQEEGQDMEVTFNTGLEDLSKRILEKKDKKSETVWEAYLRKRREKKKARKNQSKYSSEEDSSDTDEEGMEGIEQPDDF
FIEEPSVKKVNSKDYQGKKNKEEKQLQDTDREAEASKAELELLLADDKGGKKGLKGYNLKPKKAKGKKGKEVPDEDKIPTSNLDDPRFSALFTSPLFALD
PTDPQFKRSAVYARQLALKPQKSGEQQLVEGENEKQAEKAQLLSDDPAMDRNEYMISDGLPERKEKYELSTLVRSIKMKSKQVQSSSNTKDKQLQPKGLK
ETEKPELSTLVQSAKKAKVLKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G01160 unknown protein Potri.005G108800
[exp]
0 1
AT3G02760 Class II aaRS and biotin synth... Potri.019G071400
[exp]
1.41 0.8632
AT3G55340 PHIP1 phragmoplastin interacting pro... Potri.010G209701
[exp]
1.73 0.8693
AT3G47120 C3HZnF RNA recognition motif (RRM)-co... Potri.009G044900
[exp]
2.44 0.8570
AT5G66540 unknown protein Potri.015G078500
[exp]
2.82 0.8544
AT2G34780 EMB1611, MEE22 EMBRYO DEFECTIVE 1611, materna... Potri.011G161901
[exp]
3.46 0.8521
AT1G31970 STRS1 STRESS RESPONSE SUPPRESSOR 1, ... Potri.003G098800
[exp]
3.87 0.8524
AT5G09880 Splicing factor, CC1-like (.1) Potri.005G148100
[exp]
5.91 0.8467
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.013G145300
[exp]
8.77 0.8343
AT3G02490 Pentatricopeptide repeat (PPR)... Potri.004G108000
[exp]
10.95 0.7850
AT3G18600 P-loop containing nucleoside t... Potri.001G250700
[exp]
11.83 0.7730

Potri.005G108800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.