Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G42180 442 / 3e-157 PER64 peroxidase 64, Peroxidase superfamily protein (.1) AT5G51890 358 / 2e-124 Peroxidase superfamily protein (.1) AT4G33420 284 / 5e-95 Peroxidase superfamily protein (.1) AT1G05260 271 / 7e-90 RCI3A, RCI3 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) AT5G64120 265 / 2e-87 Peroxidase superfamily protein (.1) AT5G15180 264 / 5e-87 Peroxidase superfamily protein (.1) AT4G36430 264 / 6e-87 Peroxidase superfamily protein (.1) AT1G05250 263 / 6e-87 Peroxidase superfamily protein (.1) AT1G05240 263 / 6e-87 Peroxidase superfamily protein (.1) AT3G01190 263 / 9e-87 Peroxidase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G018000 [exp] 491 / 8e-177 AT5G42180 483 / 1e-173 peroxidase 64, Peroxidase superfamily protein (.1) Potri.007G122200 [exp] 296 / 2e-99 AT5G15180 395 / 2e-138 Peroxidase superfamily protein (.1) Potri.007G122351 [exp] 295 / 3e-99 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122401 [exp] 295 / 3e-99 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122250 [exp] 295 / 3e-99 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.007G122301 [exp] 295 / 3e-99 AT5G15180 396 / 9e-139 Peroxidase superfamily protein (.1) Potri.018G136900 [exp] 294 / 7e-99 AT4G33420 451 / 1e-160 Peroxidase superfamily protein (.1) Potri.007G122451 [exp] 291 / 2e-97 AT5G15180 374 / 3e-130 Peroxidase superfamily protein (.1) Potri.T045500 [exp] 290 / 2e-97 AT4G33420 441 / 9e-157 Peroxidase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005614 [exp] 453 / 2e-161 AT5G42180 461 / 6e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10034547 [exp] 451 / 7e-161 AT5G42180 471 / 7e-169 peroxidase 64, Peroxidase superfamily protein (.1) Lus10017288 [exp] 451 / 1e-160 AT5G42180 462 / 4e-165 peroxidase 64, Peroxidase superfamily protein (.1) Lus10031664 [exp] 355 / 5e-123 AT5G51890 453 / 1e-161 Peroxidase superfamily protein (.1) Lus10027405 [exp] 353 / 7e-122 AT5G51890 448 / 2e-159 Peroxidase superfamily protein (.1) Lus10029543 [exp] 294 / 8e-99 AT4G33420 479 / 1e-171 Peroxidase superfamily protein (.1) Lus10032926 [exp] 275 / 2e-91 AT1G05260 292 / 5e-98 RARE COLD INDUCIBLE GENE 3, Peroxidase superfamily protein (.1) Lus10001324 [exp] 274 / 7e-91 AT5G17820 327 / 6e-112 Peroxidase superfamily protein (.1) Lus10013631 [exp] 272 / 3e-90 AT5G17820 331 / 2e-113 Peroxidase superfamily protein (.1) Lus10018374 [exp] 271 / 7e-90 AT3G01190 414 / 4e-146 Peroxidase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0617 [poplar] [flax] Peroxidase PF00141 [poplar] [flax] peroxidase Peroxidase
Representative CDS sequence Show only first row Show all	>Potri.005G108900.1 pacid=42802701 polypeptide=Potri.005G108900.1.p locus=Potri.005G108900 ID=Potri.005G108900.1.v4.1 annot-version=v4.1 ATGGCTTTTGTTGCTGCTTTATGCTTGAGCTCGGTTCTCGTATTCTCGATATCTTCAGGAGCAGATGCACTGAGCTTGAATTACTATGAGAAAACATGCC CTGATGTCGATTCCATTGTTACGAATGCTGTCAATCATGCAATGATGAAAGACAAAACGGTCCCCGCAGCGCTACTCCGGATGCATTTCCATGACTGTTT CATAAGAGCCTGTGATGCTTCTGTTCTGCTAAATTCGAAAGGGAACAACAAAGCAGAGAAAGATGGCCCACCTAATATGTCTTTGCATGCGTTTTATGTC ATTGACAACGCAAAGAAAGAAGTGGAAGCTTCATGCCCAGGAGTGGTATCATGCGCTGATATCTTGGCTTTAGCTGCAAGAGATGCAGTTGTACTTTCCG GAGGTCCAACATGGGATGTCCCAAAAGGAAGAAAAGATGGGAGAACGTCAAGGGCTAGTGAAACAACACGGTTGCCTTCTCCTTCCTTTAACATAGCTCA GCTGCAGCAGAGTTTCTCTCAGAGAGGTCTGTCCCTGGATGACCTTGTGGCTCTTTCAGGTGGCCATACTTTAGGGTTTTCCCACTGCTCATCCTTCCAA AGTAGAATCCGCAATTTCAATGCCACTCATGACATAGACCCATCCATGCATCCATCGTTTGCAGCCAGCTTAAGGAGTATTTGTCCAAAATCGAACAGGG CAAAGAATGCAGGAACAACCATGGATCCCTCGTCGACAACTTTTGATAATACATATTTCAAGTCGATCCTCCAGAAAAGGGGTCTATTCTCCTCAGACCA ATCTCTACTCAGCACTCCAAAGACTAAAGATTTGGTCACCAAGTTTGCTAGCTCCAAAGCCAATTTCAATAAGGCTTTTGTATCATCCATGATCAAGATG AGTAGCATCACAGGCGGTCAGGAGGTTAGGAAGGATTGTAGGGTGGTAAACTAA
AA sequence Show only first row Show all	>Potri.005G108900.1 pacid=42802701 polypeptide=Potri.005G108900.1.p locus=Potri.005G108900 ID=Potri.005G108900.1.v4.1 annot-version=v4.1 MAFVAALCLSSVLVFSISSGADALSLNYYEKTCPDVDSIVTNAVNHAMMKDKTVPAALLRMHFHDCFIRACDASVLLNSKGNNKAEKDGPPNMSLHAFYV IDNAKKEVEASCPGVVSCADILALAARDAVVLSGGPTWDVPKGRKDGRTSRASETTRLPSPSFNIAQLQQSFSQRGLSLDDLVALSGGHTLGFSHCSSFQ SRIRNFNATHDIDPSMHPSFAASLRSICPKSNRAKNAGTTMDPSSTTFDNTYFKSILQKRGLFSSDQSLLSTPKTKDLVTKFASSKANFNKAFVSSMIKM SSITGGQEVRKDCRVVN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G42180		PER64	peroxidase 64, Peroxidase supe...		Potri.005G108900 [exp]	0	1
AT4G39070	CO		B-box zinc finger family prote...		Potri.009G122000 [exp]	2.00	0.8369
AT2G45190	YABBY	FIL, YAB1, AFO	YABBY1, FILAMENTOUS FLOWER, AB...		Potri.001G120200 [exp]	3.87	0.8020
AT1G70210		ATCYCD1;1, CYCD...	CYCLIN D1;1 (.1)		Potri.007G005700 [exp]	4.58	0.7760
AT1G12700		RPF1	RNA processing factor 1, ATP b...		Potri.018G038300 [exp]	4.89	0.7600
AT4G30420			nodulin MtN21 /EamA-like trans...		Potri.006G177700 [exp]	6.63	0.8052
AT4G21760		BGLU47	beta-glucosidase 47 (.1)		Potri.001G403900 [exp]	7.21	0.7595
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Potri.001G342600 [exp]	8.30	0.7391
AT1G55790			Domain of unknown function (DU...		Potri.011G141700 [exp]	9.74	0.7922
AT1G55790			Domain of unknown function (DU...		Potri.001G438100 [exp]	9.79	0.7948
AT5G67480		ATBT4, BT4	BTB and TAZ domain protein 4 (...		Potri.007G055100 [exp]	10.19	0.7056

Compare expression of checked genes

Potri.005G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.