Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63855 260 / 7e-89 Putative methyltransferase family protein (.1.2.3) AT5G27410 59 / 8e-10 D-aminoacid aminotransferase-like PLP-dependent enzymes superfamily protein (.1.2) AT5G27400 58 / 8e-10 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT2G26810 54 / 2e-08 Putative methyltransferase family protein (.1.2.3) AT1G73320 52 / 8e-08 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G01470 51 / 1e-07 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT1G79915 49 / 7e-07 Putative methyltransferase family protein (.1) AT4G35987 47 / 3e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G49560 42 / 0.0002 Putative methyltransferase family protein (.1) AT3G50850 41 / 0.0002 Putative methyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G068400 [exp] 56 / 3e-09 AT2G26810 345 / 2e-121 Putative methyltransferase family protein (.1.2.3) Potri.001G181200 [exp] 54 / 2e-08 AT1G79915 308 / 4e-104 Putative methyltransferase family protein (.1) Potri.006G100100 [exp] 52 / 7e-08 AT5G01470 338 / 4e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.017G153900 [exp] 52 / 1e-07 AT1G73320 347 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Potri.005G039000 [exp] 51 / 2e-07 AT5G27400 361 / 6e-123 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G148200 [exp] 46 / 6e-06 AT5G44170 46 / 7e-06 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G057000 [exp] 40 / 0.0008 AT4G35987 410 / 5e-145 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028415 [exp] 349 / 1e-123 AT1G63855 248 / 2e-84 Putative methyltransferase family protein (.1.2.3) Lus10041869 [exp] 348 / 6e-123 AT1G63855 255 / 8e-87 Putative methyltransferase family protein (.1.2.3) Lus10015166 [exp] 64 / 7e-12 AT5G27400 377 / 9e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10031516 [exp] 59 / 6e-10 AT5G27400 364 / 1e-125 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10002489 [exp] 55 / 7e-09 AT5G01470 343 / 2e-120 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10031894 [exp] 53 / 3e-08 AT1G73320 362 / 1e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) Lus10004816 [exp] 50 / 3e-07 AT5G01470 342 / 6e-118 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10028446 [exp] 50 / 6e-07 AT4G35987 402 / 6e-142 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041898 [exp] 45 / 2e-05 AT5G13700 349 / 2e-113 polyamine oxidase 1 (.1) Lus10035886 [exp] 44 / 6e-05 AT1G79915 291 / 1e-97 Putative methyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF10294 [poplar] [flax] Methyltransf_16 Lysine methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.005G109000.1 pacid=42803931 polypeptide=Potri.005G109000.1.p locus=Potri.005G109000 ID=Potri.005G109000.1.v4.1 annot-version=v4.1 ATGGACACGGAAGACGGCGCTGACAGCGGCTCTTCTTCGGGCGGGAACATGACCACGGTATCTCAGCATACTTTCGGTGACAAATTTGACAAACCGGCGT TCACCATCTCAATAATCGAGAATATGAAAGAAGAATATGGCCTGTTTGTGTGGCCATGTAGTGTTGTACTTGCTGAGTATGTTTGGCAACAGAGATTGCA GTTTTCTGGTGTTAGTGTTCTCGAGCTTGGTGCAGGGACTTGTTTGCCTGGATTAGTGGCTGCTAAGTTGGGATTAGATGTTACTCTGACTGATGATTCT AATAAATTGGAGGTGTTGGACAACATGAGAAGAGTGTGCGACTTGAATCAACTTAATTGTAAAGTGTTGGGACTGACATGGGGAGTTTGGGATGAGTCTA TATTCACTTTGAAGCCAAAACTTATTCTTGGGGCTGATGTACTCTATGATGCAAGTGCTTTTGATGACCTTTTTGCCACTGTGACATTCCTGCTCCAAAA CTCTCCGGGGTCTGTCTTTATAACAACTTATCATAATAGAAGTGGGCATCATCTTATTGAATTCCTGATGCTCAAATGGGGATTAAAGTGCGTAAAGCTC ATTGATGTTTTTTCTTTCATGCCACCCAACAAGGCATCCGGGCTAAGTGGCAATATTCAATTGGCAGAGATTGTATTAATCAGTGAATAG
AA sequence Show only first row Show all	>Potri.005G109000.1 pacid=42803931 polypeptide=Potri.005G109000.1.p locus=Potri.005G109000 ID=Potri.005G109000.1.v4.1 annot-version=v4.1 MDTEDGADSGSSSGGNMTTVSQHTFGDKFDKPAFTISIIENMKEEYGLFVWPCSVVLAEYVWQQRLQFSGVSVLELGAGTCLPGLVAAKLGLDVTLTDDS NKLEVLDNMRRVCDLNQLNCKVLGLTWGVWDESIFTLKPKLILGADVLYDASAFDDLFATVTFLLQNSPGSVFITTYHNRSGHHLIEFLMLKWGLKCVKL IDVFSFMPPNKASGLSGNIQLAEIVLISE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63855			Putative methyltransferase fam...		Potri.005G109000 [exp]	0	1
AT4G26350			F-box/RNI-like/FBD-like domain...		Potri.011G024600 [exp]	4.79	0.8366
AT3G49050			alpha/beta-Hydrolases superfam...		Potri.015G145900 [exp]	5.74	0.8298
AT1G60800		NIK3	NSP-interacting kinase 3 (.1)		Potri.008G188800 [exp]	6.32	0.8621
AT5G40840		SYN2, ATRAD21.1	Sister chromatid cohesion 1 \(...		Potri.017G067400 [exp]	12.36	0.8662	SYN2.1
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	13.63	0.8669
AT2G01980		ATSOS1, SOS1, A...	ARABIDOPSIS SALT OVERLY SENSIT...		Potri.010G100900 [exp]	18.89	0.8539	NHX8.2
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	20.71	0.8257
AT2G20770		GCL2	GCR2-like 2 (.1)		Potri.013G134700 [exp]	21.93	0.8434
AT3G51070			S-adenosyl-L-methionine-depend...		Potri.007G017400 [exp]	23.95	0.8256
AT3G29320		PHS1	alpha-glucan phosphorylase 1, ...		Potri.008G093901 [exp]	25.92	0.8592

Compare expression of checked genes

Potri.005G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.