Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35890 179 / 1e-49 winged-helix DNA-binding transcription factor family protein (.1) AT5G66100 146 / 2e-38 winged-helix DNA-binding transcription factor family protein (.1) AT5G21160 95 / 3e-20 LA RNA-binding protein (.1.2.3) AT5G46250 64 / 1e-10 RNA-binding protein (.1.2.3) AT2G43970 51 / 2e-06 RNA-binding protein (.1.2) AT3G19090 51 / 2e-06 RNA-binding protein (.1) AT4G32720 49 / 5e-06 ATLA1 La protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063600 [exp] 600 / 0 AT4G35890 165 / 1e-44 winged-helix DNA-binding transcription factor family protein (.1) Potri.005G243600 [exp] 124 / 3e-30 AT5G66100 109 / 1e-25 winged-helix DNA-binding transcription factor family protein (.1) Potri.001G220100 [exp] 113 / 4e-26 AT5G21160 607 / 0.0 LA RNA-binding protein (.1.2.3) Potri.009G018100 [exp] 103 / 4e-23 AT5G21160 660 / 0.0 LA RNA-binding protein (.1.2.3) Potri.011G080700 [exp] 66 / 1e-11 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.017G007400 [exp] 57 / 2e-08 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.007G144800 [exp] 55 / 9e-08 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.006G241800 [exp] 48 / 2e-05 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.004G144700 [exp] 47 / 3e-05 AT3G19090 363 / 3e-122 RNA-binding protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014254 [exp] 315 / 3e-102 AT4G35890 246 / 6e-76 winged-helix DNA-binding transcription factor family protein (.1) Lus10025951 [exp] 312 / 3e-100 AT4G35890 264 / 4e-82 winged-helix DNA-binding transcription factor family protein (.1) Lus10025953 [exp] 297 / 1e-95 AT4G35890 226 / 8e-69 winged-helix DNA-binding transcription factor family protein (.1) Lus10041277 [exp] 99 / 4e-21 AT5G21160 563 / 0.0 LA RNA-binding protein (.1.2.3) Lus10014255 [exp] 87 / 1e-18 AT4G35890 91 / 5e-20 winged-helix DNA-binding transcription factor family protein (.1) Lus10025954 [exp] 78 / 1e-17 ND 43 / 7e-06 Lus10037431 [exp] 84 / 2e-16 AT5G21160 643 / 0.0 LA RNA-binding protein (.1.2.3) Lus10038494 [exp] 64 / 1e-10 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10023315 [exp] 64 / 2e-10 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10025952 [exp] 51 / 2e-07 AT4G35890 54 / 8e-09 winged-helix DNA-binding transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF05383 [poplar] [flax] La La domain
Representative CDS sequence Show only first row Show all	>Potri.005G109400.1 pacid=42804518 polypeptide=Potri.005G109400.1.p locus=Potri.005G109400 ID=Potri.005G109400.1.v4.1 annot-version=v4.1 ATGGCAACCTTAACTAATTCTAACCCAAACAGCATCGCCGCCGCCGATCACTCTCCACGTCACACAATCGCCGCCGATAACATCAGTAGCAGCAGTAATC CGGTGAGTAGTCCACAATCGCGACGGGCAGCCGGGAAGCAGGTTTCTCCACCGTGGGCACGAATCGTGCGCGGTGCTGAATCGGAATTTTCTTCTACTGC TTCAACGGTGGCGGAGCAAGCGGCTGCGGTTTTAGTGGTGGAGGAAGAGAGTGTGGAGAGTGAGAATAATGCGAGTAAGAGACCGGTGTGGAACAAGCCA TTGACAGCTAGTAATGGTCCTGTGGAGATTGGGAATGTTATGGGGGCTGATTCTTGGCCTGCTTTATCTGAGTCAGCTGCTAGGGCTTCTTCTTCGACAA AATCATCTTCTGATTCTTTGAAGGGCTCATTATCCGATGGATCATCATCTTCTGTCTCTGTTTCACAGGGAATTGGAACTGCATCCTCATCTTCGCAGAA ACAAGTTGCCAATAGTGCAAACACTAATTCAACTTCAAACCATATAGTGCCAGTACGCCAAAGGTCAATGAAGCGCAGTGGTGCTAACACAACTTCTAAT GGTGGTGCTCCTCAGTCACCAGGATCACAGGGCACGACAGGTGAAGGACATTCAAATAACTCTTCTTCTGGGGACCATGGGCAAAGGAATTCCCAATCCC GTAGCTTTAATGATCATCCACAACAACGCAATTCATTCAGGAACCGTAATGGTGGGCCACATTCTCGAGGAGATGGTTCTCATCATCATAGTTATGGTGG CAGGAGAAATGATCAAGATCGTTCAAATCAAGATTGGAATGCTCATCGAAATTTTAATAGGGATGGTGGCCATGTGCAGCCATCACCAGGAGTTTCCGCA AGGCTTATGAGGCATCCACCACCACCTCCACCACCACCTGCAGCTGCTACTACTTTTGTTGCACCCCCACCAGTCCGGCCTTTCAGCCCCATGGGGTTCC CTGATATGCGATCGCCGCTATATTATGTTGCCCCGCATCCAGATTCTATGAGAGGTGTGCCTATTATTGCGGCACCAATACCACCTCATGCTGTTTTTTT CTCTTCCGATCCCCAGTTGCATAATAAGATATTGCGTCAGATAGACTATTATTTCAGTAATGAAAATTTAATTAAAGATTTATACTTGCGGAAGAACATG GATGATCAAGGCTGGGTGCCTATTAAACTGATAGCAAGCTTCAACAAAGTTTTGCTTTTGACTGACAATATCCAACTTATACTGGATGCTATAAGAAATT CAAGTGTCGTCGAAATACAGGGCGAGAAGGTGAGGAAGCGAAATGATTGGATGAGGTGGATCATGACAACTCCTATTCAGTTTCCTAATGTTTCCAGCCC TCAGTCTGGTGAGAAGTCCGGCCATGACATGCTGGTAGCCAATGTCCAAGGCATATCTCTGGAGGAGATGACTGCTGGCCATAGCAATGTGAGGAGTCAA GCAGATGTTCGTACTGAAGCTTTTCTTGGTAGATCATTGTCTGGGGATTTTAATAGCCAGTCACAGCTGTCTAGCAGCAAGGGAATTGATGAAAACAGAT TTCAAGGAGATTTGGATCTCCCCACTTCATCAAGAAATTCAAGTAAGTAA
AA sequence Show only first row Show all	>Potri.005G109400.1 pacid=42804518 polypeptide=Potri.005G109400.1.p locus=Potri.005G109400 ID=Potri.005G109400.1.v4.1 annot-version=v4.1 MATLTNSNPNSIAAADHSPRHTIAADNISSSSNPVSSPQSRRAAGKQVSPPWARIVRGAESEFSSTASTVAEQAAAVLVVEEESVESENNASKRPVWNKP LTASNGPVEIGNVMGADSWPALSESAARASSSTKSSSDSLKGSLSDGSSSSVSVSQGIGTASSSSQKQVANSANTNSTSNHIVPVRQRSMKRSGANTTSN GGAPQSPGSQGTTGEGHSNNSSSGDHGQRNSQSRSFNDHPQQRNSFRNRNGGPHSRGDGSHHHSYGGRRNDQDRSNQDWNAHRNFNRDGGHVQPSPGVSA RLMRHPPPPPPPPAAATTFVAPPPVRPFSPMGFPDMRSPLYYVAPHPDSMRGVPIIAAPIPPHAVFFSSDPQLHNKILRQIDYYFSNENLIKDLYLRKNM DDQGWVPIKLIASFNKVLLLTDNIQLILDAIRNSSVVEIQGEKVRKRNDWMRWIMTTPIQFPNVSSPQSGEKSGHDMLVANVQGISLEEMTAGHSNVRSQ ADVRTEAFLGRSLSGDFNSQSQLSSSKGIDENRFQGDLDLPTSSRNSSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35890			winged-helix DNA-binding trans...		Potri.005G109400 [exp]	0	1
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.006G258300 [exp]	1.00	0.8384
AT1G48760		PAT4, DELTA-ADR	PROTEIN-AFFECTED TRAFFICKING 4...		Potri.015G045600 [exp]	4.89	0.7848
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.002G217200 [exp]	5.29	0.8077
AT4G19900			alpha 1,4-glycosyltransferase ...		Potri.015G122200 [exp]	6.92	0.7810
AT5G20600			unknown protein		Potri.012G036500 [exp]	7.07	0.8368
AT1G18190		GC2	golgin candidate 2 (.1)		Potri.015G039800 [exp]	9.94	0.8108
AT4G12780			Chaperone DnaJ-domain superfam...		Potri.014G197600 [exp]	12.24	0.7731
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	15.16	0.7513
AT1G11480			eukaryotic translation initiat...		Potri.007G119200 [exp]	15.42	0.7348
AT1G03350			BSD domain-containing protein ...		Potri.010G028801 [exp]	18.02	0.8009

Compare expression of checked genes

Potri.005G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.