Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51325 62 / 3e-13 RING/U-box superfamily protein (.1) AT1G15100 57 / 7e-11 RHA2A RING-H2 finger A2A (.1) AT3G30460 52 / 4e-09 RING/U-box superfamily protein (.1) AT2G01150 52 / 4e-09 RHA2B RING-H2 finger protein 2B (.1) AT4G32600 50 / 9e-08 RING/U-box superfamily protein (.1) AT1G80400 50 / 1e-07 RING/U-box superfamily protein (.1) AT1G72310 50 / 1e-07 ATL3 RING/U-box superfamily protein (.1) AT5G45290 49 / 2e-07 RING/U-box superfamily protein (.1.2) AT1G26800 48 / 2e-07 RING/U-box superfamily protein (.1) AT2G04240 48 / 2e-07 XERICO RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G047100 [exp] 56 / 2e-10 AT1G67856 133 / 4e-41 RING/U-box superfamily protein (.1) Potri.008G125700 [exp] 54 / 1e-09 AT2G01150 125 / 5e-37 RING-H2 finger protein 2B (.1) Potri.008G185800 [exp] 53 / 2e-09 AT1G67856 127 / 2e-38 RING/U-box superfamily protein (.1) Potri.005G081200 [exp] 52 / 8e-09 AT1G15100 74 / 3e-17 RING-H2 finger A2A (.1) Potri.010G118000 [exp] 50 / 5e-08 AT1G15100 142 / 7e-44 RING-H2 finger A2A (.1) Potri.006G247000 [exp] 49 / 2e-07 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.014G170400 [exp] 47 / 2e-07 AT2G04240 181 / 3e-59 RING/U-box superfamily protein (.1.2) Potri.018G034400 [exp] 49 / 3e-07 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.010G010500 [exp] 48 / 4e-07 AT3G16720 202 / 1e-63 TOXICOS EN LEVADURA 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018292 [exp] 95 / 1e-25 AT3G51325 74 / 3e-18 RING/U-box superfamily protein (.1) Lus10040617 [exp] 88 / 5e-23 AT3G51325 69 / 3e-16 RING/U-box superfamily protein (.1) Lus10013144 [exp] 50 / 6e-08 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10008106 [exp] 50 / 1e-07 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10022567 [exp] 49 / 2e-07 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2) Lus10002706 [exp] 48 / 4e-07 AT3G55530 382 / 5e-135 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10000513 [exp] 48 / 4e-07 AT3G55530 389 / 7e-138 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10001568 [exp] 48 / 5e-07 AT3G55530 361 / 9e-127 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1) Lus10023235 [exp] 47 / 7e-07 AT5G08139 194 / 7e-58 RING/U-box superfamily protein (.1) Lus10004977 [exp] 47 / 8e-07 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G109600.1 pacid=42803116 polypeptide=Potri.005G109600.1.p locus=Potri.005G109600 ID=Potri.005G109600.1.v4.1 annot-version=v4.1 ATGGTTCTCAAAAAATTCGTCTCCTTCGTGTACAGCTTCATAGGCCTCAGATGGCATCCGAGGATTAAAGATGCGGCGGCAGCTGCAGCTTGTAGGAGAA TCACAGTGGATGTGTCGGGCAACGTCAAGCAAGGCGTGCTCGAATCTCCTGTCGGATCAAGTTCATCCGAAATCATAGAAGCTGAAGGTGAATACTGTTG TGTTTGCTTGTCGCGATTGAAGGCAGATGAGGACACGAGTGCTTTACCATGCTTGCACAGGTTTCATAAGGTATGCATAGAAGGATGGTTTAATAATGTG TGTCGAAGAACTTGTCCGCTGTGCCGGTCGTCCATGGGGGGAGAAGAGAGGTCTCATAAGAGAGAAGAACAGTTCACTGAAGAGATGGTAATATGGTTTT CTTCTTTTCATGTAGCTGGTTTTTGA
AA sequence Show only first row Show all	>Potri.005G109600.1 pacid=42803116 polypeptide=Potri.005G109600.1.p locus=Potri.005G109600 ID=Potri.005G109600.1.v4.1 annot-version=v4.1 MVLKKFVSFVYSFIGLRWHPRIKDAAAAAACRRITVDVSGNVKQGVLESPVGSSSSEIIEAEGEYCCVCLSRLKADEDTSALPCLHRFHKVCIEGWFNNV CRRTCPLCRSSMGGEERSHKREEQFTEEMVIWFSSFHVAGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51325			RING/U-box superfamily protein...		Potri.005G109600 [exp]	0	1
AT2G37090		IRX9	IRREGULAR XYLEM 9, Nucleotide-...		Potri.006G131000 [exp]	3.00	0.9508
AT2G37585			Core-2/I-branching beta-1,6-N-...		Potri.006G263000 [exp]	4.89	0.9259
AT5G16590		LRR1	Leucine rich repeat protein 1,...		Potri.004G086100 [exp]	5.29	0.9230
AT1G09610			Protein of unknown function (D...		Potri.004G226800 [exp]	8.12	0.9277
AT2G34410		RWA3	REDUCED WALL ACETYLATION 3, O-...		Potri.011G079400 [exp]	8.60	0.9409
					Potri.011G057400 [exp]	11.83	0.9166
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	13.26	0.9142
					Potri.004G048201 [exp]	15.65	0.8851
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Potri.007G047500 [exp]	15.87	0.9233
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Potri.008G095000 [exp]	17.49	0.9090	Pt-GRF12.2

Compare expression of checked genes

Potri.005G109600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.