Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23780 244 / 2e-74 F-box family protein (.1) AT1G23770 173 / 4e-49 F-box family protein (.1) AT1G70360 110 / 7e-28 F-box family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G020600 [exp] 190 / 1e-55 AT1G23780 0 / 1 F-box family protein (.1) Potri.017G134500 [exp] 74 / 2e-15 AT1G23780 0 / 1 F-box family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012441 [exp] 334 / 4e-108 AT1G23780 215 / 3e-63 F-box family protein (.1) Lus10033762 [exp] 322 / 4e-103 AT1G23780 199 / 4e-57 F-box family protein (.1) Lus10011411 [exp] 171 / 5e-49 AT1G23770 110 / 5e-28 F-box family protein (.1) Lus10006139 [exp] 80 / 6e-18 AT1G23780 62 / 3e-12 F-box family protein (.1) Lus10006138 [exp] 59 / 2e-10 AT1G23770 53 / 3e-09 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF11543 [poplar] [flax] UN_NPL4 Nuclear pore localisation protein NPL4 CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.005G109700.2 pacid=42802952 polypeptide=Potri.005G109700.2.p locus=Potri.005G109700 ID=Potri.005G109700.2.v4.1 annot-version=v4.1 ATGAAGCTGAGATTGAGGTCTGTGCAATCTAAAGAAACTGTGAAAATACAAGTGCCGGATTCTTGTACTTTGCAGCAACTAAAAGAAACACTTTCTCGAG CAATATCTTCTTCTGGCTCGTCTCTTTATTTGTCTCTTAATAGAAAGGATGAGCTCAATACCTCATTGCCTGAGGATTCTTTGCAATCACTCGGTATTAC GTCTGGTGACCTTATCTATTTCTCTGTCAATCCCAAAGATTTCTCATCCTCTGGTCAACCCCTATGTTTAGGTTCTAGTTCCTCTATACAAGAACAGGTT CAAGGTCATCGGGGTAATGTAGAAGAGCCCATGCCAGATCAATCGATGAGTTTTCAAGAGTCTAAATGTTCGGATTTGAATATGCTCGAGAATCAAGATT TGTTCGTACAAGGGCATGTTGGTGTTCAGGCTAATGATACCAATTCTCGAGAAACCATATCTGAAATCTCTCCACAGATGCACTTGCTAGGACAGAAGCA TGGGATTGCAGAATCAGATATGAACGGTGCAGTTACTGAAGGACATGGAGCTCTGGGTTCAAAAACTCGGAGCAGAGAAACCTTAGAGACCCAAGAATTG ACCAGTGTAGAAGCTATGGATGTTGATCCTGGATCTGTAGATGTGGGCAATAAGAGGTTCTCTGAACCGTATTTCTTGAGGAGGCTATTGAGGAAAGAAT TGGGTGATGATGGTAGCAACTACAAGCTCTTGGTTATTGCAGTTCACGCTGTTTTTATAGAATCTGGTTTTGTTGGGTTCAATTCTATATCTGGGATGCG AGTTGATGGATTTCACCTTCCAGAAGAGCAGTCATCTAGGAATTTGGCAGTGTCACTTTGTTACACTCTTCCTGAACTTTTGGACAGTAAAGTTATCGCT GAAACAATTGTTTTGAAGCTCCAGAGTTTAGGCCATTTTGTTAATGTCTATGGGAGTTTGTCCAAGGGTGGATCAGGGCTATATCACGCACGTCTGGATA TAAATAAATTTGTGCCAGCTATAGATTTTGTGTGGGAAAATGATAAGAATGATGGGATGAATGGAAGTGATAGGTCATCCATTTTGTATCCTGAAAATGA AATTTTTGAGTTCTGGAAAATTGTGAAGGATGGTCTTGCTTTGCCATTGTTGATAGATATTTGTGAGAAGGCTGGTCTGGTTCTTCCTTCATGCTTGATG CGCCTCCCAACAGAGCTGAAGCTCAAGATTTTTGAGTTGTTACCTGCTATTGATATTGCAAAAATGGAATGTGTTTGTTCAGAAATGCGTTACTTGTCTT CGAACAATGATTTATGGAAGCAGAAATTTGTGGAGGAGTTTGGAGATGGGACAGCAGCACATGGAACTCTCAATTGGAAGGCGAGGTTTGCTTCATATTG GGAGAATAAGAAGCGGAAGAGGGATTTCAATGCGTGGCAGGAGTATCCGCAATTTCTGCCCTTTCATGTCCCGATCAGGAGGGACCCTAATCCATTATGG TGTCCTTCAATTATAGGTGGTGATTATGACCGTCTGCCGGGGCTTGGTATTCCTCCTTATCGGCGTCCTGGTATAGGATGGCCCCAACCACGTCATAATT TTTCACCCAATTGTAACCTGGGGGGATTCAGTTCCTAG
AA sequence Show only first row Show all	>Potri.005G109700.2 pacid=42802952 polypeptide=Potri.005G109700.2.p locus=Potri.005G109700 ID=Potri.005G109700.2.v4.1 annot-version=v4.1 MKLRLRSVQSKETVKIQVPDSCTLQQLKETLSRAISSSGSSLYLSLNRKDELNTSLPEDSLQSLGITSGDLIYFSVNPKDFSSSGQPLCLGSSSSIQEQV QGHRGNVEEPMPDQSMSFQESKCSDLNMLENQDLFVQGHVGVQANDTNSRETISEISPQMHLLGQKHGIAESDMNGAVTEGHGALGSKTRSRETLETQEL TSVEAMDVDPGSVDVGNKRFSEPYFLRRLLRKELGDDGSNYKLLVIAVHAVFIESGFVGFNSISGMRVDGFHLPEEQSSRNLAVSLCYTLPELLDSKVIA ETIVLKLQSLGHFVNVYGSLSKGGSGLYHARLDINKFVPAIDFVWENDKNDGMNGSDRSSILYPENEIFEFWKIVKDGLALPLLIDICEKAGLVLPSCLM RLPTELKLKIFELLPAIDIAKMECVCSEMRYLSSNNDLWKQKFVEEFGDGTAAHGTLNWKARFASYWENKKRKRDFNAWQEYPQFLPFHVPIRRDPNPLW CPSIIGGDYDRLPGLGIPPYRRPGIGWPQPRHNFSPNCNLGGFSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23780			F-box family protein (.1)		Potri.005G109700 [exp]	0	1
AT1G15060			Uncharacterised conserved prot...		Potri.012G053700 [exp]	3.00	0.6702
AT4G39090		EMB3005, RD19A,...	RESPONSIVE TO DEHYDRATION 19A,...		Potri.004G160300 [exp]	4.69	0.6723	RD19.3
AT2G11890			adenylate cyclases (.1.2)		Potri.003G198200 [exp]	5.19	0.6840
AT3G28920	ZF_HD	ATHB34, ZHD9	ZINC FINGER HOMEODOMAIN 9, hom...		Potri.017G082900 [exp]	5.65	0.6562
AT4G37880			LisH/CRA/RING-U-box domains-co...		Potri.012G127300 [exp]	6.48	0.6385
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	14.49	0.6116
AT3G19640		MRS2-3, MGT4	magnesium transporter 4 (.1)		Potri.009G086300 [exp]	14.69	0.5462
AT2G06010		ORG4	OBP3-responsive gene 4 (.1)		Potri.006G142000 [exp]	19.18	0.5349
AT3G19950			RING/U-box superfamily protein...		Potri.007G074014 [exp]	20.07	0.6154
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	23.87	0.5632

Compare expression of checked genes

Potri.005G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.