Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51320 527 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G37380 296 / 2e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G66520 288 / 1e-89 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G06540 286 / 8e-89 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G20540 283 / 1e-88 MEF21 mitochondrial editing factor 21 (.1) AT5G48910 283 / 2e-87 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 281 / 2e-87 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G42920 278 / 2e-86 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G08305 271 / 7e-84 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G74630 271 / 9e-83 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G050200 [exp] 322 / 2e-102 AT4G37380 817 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G175900 [exp] 306 / 1e-97 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G231200 [exp] 307 / 8e-97 AT5G66520 504 / 1e-172 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G202600 [exp] 304 / 2e-96 AT2G42920 660 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.007G073100 [exp] 300 / 8e-95 AT5G08305 600 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G065500 [exp] 301 / 1e-94 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G012600 [exp] 301 / 9e-94 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G031600 [exp] 298 / 6e-92 AT3G15930 784 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G019400 [exp] 288 / 6e-91 AT1G09190 574 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010385 [exp] 314 / 2e-99 AT4G37380 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024971 [exp] 313 / 6e-99 AT4G37380 772 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10007341 [exp] 298 / 3e-94 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029344 [exp] 300 / 5e-94 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010901 [exp] 294 / 8e-94 AT3G15930 360 / 2e-118 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 301 / 3e-93 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10005987 [exp] 289 / 4e-91 AT5G08510 602 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010183 [exp] 288 / 1e-90 AT5G08305 529 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018223 [exp] 290 / 4e-89 AT2G29760 931 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027389 [exp] 283 / 7e-89 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.005G109800.1 pacid=42805479 polypeptide=Potri.005G109800.1.p locus=Potri.005G109800 ID=Potri.005G109800.1.v4.1 annot-version=v4.1 ATGGCAAGAATTTCAACAAGAGACATCTTTAAATTCAGACACGCCATTCTCACCCATCACCCCTCCCTTCCCACTCCAAAACAAATCACCCTCTTGTCAC CATCATCTTCATATTCCGCTTCTATAAAAGACATGCCAATTACTTCTTACAACAACCCAAGATTTGAACTCTTATACTCAACTCTAAACCCATTTCATCT TTACCAAATCCAAGCTCAATTGATTACTTGTGGCCTTTTCTCCTTATGGTCTCCTAGACTGCTCAAACATTTTGCAGATTTTGGTGATATTGATTACACT ATTTTCATTTTCAAATTTATTGCTTCTCCGGGTACTTTTGTTGTAAATAATGTTGTTAAAGCGTATTCGCTTAGTTCTGAGCCGAACAAGGCTCTTGTTT TCTATTTTGAGATGTTAAAGAGTGGGTTTTGTCCAAATAGTTACACTTTTGTTTCGCTTTTTGGGTGTTGTGCTAAAGTCGGATGTGCTAAATTAGGAAA AAAGTATCATGGGCAAGCTGTGAAAAATGGGGTTGATAGGATATTGCCAGTAGAGAATTCATTGATCCATTGTTATGGCTGTTGTGGGGATATGGGGTTA GCTAAGAAGGTGTTTGATGAAATGTCGCATAGAGATTTGGTGTCGTGGAATTCGATTATTGATGGGTATGCTACTCTTGGTGAGTTGGGTATTGCTCATG GATTGTTTGAGGTAATGCCTGAGAGAAATGTGGTTTCTTGGAACATCCTGATAAGTGGGTACTTGAAGGGTAATAATCCCGGTTGCGTGCTAATGCTGTT TAGGAAAATGATGAATGATGGGATGAGAGGTAACGATTCGACTATAGTCAGCGTGCTTAGTGCTTGTGGTAGGTCAGCTAGATTGAGGGAAGGACGTTCA GTTCATGGGTTTATTGTTAAGAAGTTTTCGAGTATGAATGTAATTCATGAGACTACATTGATAGATATGTATAATAGATGCCATAAGGTTGAAATGGCAC GGAGAATTTTTGATAAAGTGGTAAGGAGGAATTTGGGGTGCTGGAATGCAATGATTTTGGGGCATTGCCTTCATGGGAATCCAGATGATGGACTTGAGTT ATTTAAAGATATGGTTGATCGGGCAGGGTTGGGGAAACGTGACTCTGTCCATCCAGATGAAGTTACTTTCATAGGGGTGCTGTGTGCTTGTGCTCGAGCT GGACTGTTGACTGAGGGAAAGAATTTTTTCAGCCAAATGATTTACAACCACGGTCTAAAGCCAAATTTTGCACATTTTTGGTGTATGGCTAATCTTTATG CTCGTGCTGGACTAATTCAAGAGGCAGAGGATATATTAAGAACCACACAGGAGGAGGAGGAGGATATGCCATTAGAATCCTTGGTATGGGCTAATTTGCT CAATTCGTGTCGTTTCCAAGGAAATGTGGCTTTGGGGGAAAGAATTGCGAACTCATTGATCGATATGGAACCTTGGAATATTTTGCATTACCGGCTGCTA CTGAATGTTTATGCTGTGGGAGGTCGATGGGATGATGTTGCTATGGTAAAAGACCTGGTGAAAACAAAGATGAAGGGCAGAACGCCAGGATGTAATCTTG TGGACTTGAAAGAAATTGTTCACAACTACGAAGTTGGACGCCTTTTGCCAGAGAGGATTGGTGAACTCAACACACAGTTGATGAAATGGCCGTGA
AA sequence Show only first row Show all	>Potri.005G109800.1 pacid=42805479 polypeptide=Potri.005G109800.1.p locus=Potri.005G109800 ID=Potri.005G109800.1.v4.1 annot-version=v4.1 MARISTRDIFKFRHAILTHHPSLPTPKQITLLSPSSSYSASIKDMPITSYNNPRFELLYSTLNPFHLYQIQAQLITCGLFSLWSPRLLKHFADFGDIDYT IFIFKFIASPGTFVVNNVVKAYSLSSEPNKALVFYFEMLKSGFCPNSYTFVSLFGCCAKVGCAKLGKKYHGQAVKNGVDRILPVENSLIHCYGCCGDMGL AKKVFDEMSHRDLVSWNSIIDGYATLGELGIAHGLFEVMPERNVVSWNILISGYLKGNNPGCVLMLFRKMMNDGMRGNDSTIVSVLSACGRSARLREGRS VHGFIVKKFSSMNVIHETTLIDMYNRCHKVEMARRIFDKVVRRNLGCWNAMILGHCLHGNPDDGLELFKDMVDRAGLGKRDSVHPDEVTFIGVLCACARA GLLTEGKNFFSQMIYNHGLKPNFAHFWCMANLYARAGLIQEAEDILRTTQEEEEDMPLESLVWANLLNSCRFQGNVALGERIANSLIDMEPWNILHYRLL LNVYAVGGRWDDVAMVKDLVKTKMKGRTPGCNLVDLKEIVHNYEVGRLLPERIGELNTQLMKWP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51320			Pentatricopeptide repeat (PPR)...		Potri.005G109800 [exp]	0	1
AT5G15010			Tetratricopeptide repeat (TPR)...		Potri.013G053600 [exp]	2.00	0.8729
AT4G10710		SPT16	global transcription factor C ...		Potri.005G005000 [exp]	9.64	0.7939	GTC901
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	10.00	0.8407
AT5G54910			DEA(D/H)-box RNA helicase fami...		Potri.001G423300 [exp]	10.09	0.8360
AT5G09840			Putative endonuclease or glyco...		Potri.019G004000 [exp]	10.48	0.8284
AT2G18900			Transducin/WD40 repeat-like su...		Potri.018G091100 [exp]	14.49	0.8125
AT4G19890			Pentatricopeptide repeat (PPR-...		Potri.015G121700 [exp]	17.54	0.8339
AT5G48620			Disease resistance protein (CC...		Potri.014G005300 [exp]	18.33	0.7775
AT5G41190			unknown protein		Potri.003G124700 [exp]	20.39	0.8142
AT3G21540			transducin family protein / WD...		Potri.006G121100 [exp]	20.83	0.8138

Compare expression of checked genes

Potri.005G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.