Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35920 600 / 0 MCA1 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) AT2G17780 510 / 0 MCA2 mid1-complementing activity 2, PLAC8 family protein (.1.2.3.4) AT3G18470 60 / 7e-11 PLAC8 family protein (.1) AT5G35525 57 / 1e-09 PLAC8 family protein (.1) AT1G14870 55 / 6e-09 AtPCR2, PCR2 PLANT CADMIUM RESISTANCE 2 (.1) AT3G18450 56 / 7e-09 PLAC8 family protein (.1) AT1G14880 53 / 3e-08 AtPCR1, PCR1 PLANT CADMIUM RESISTANCE 1 (.1) AT1G49030 52 / 2e-07 PLAC8 family protein (.1) AT3G18460 51 / 2e-07 PLAC8 family protein (.1) AT1G52200 51 / 2e-07 PLAC8 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G184700 [exp] 344 / 5e-116 AT4G35920 300 / 9e-99 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Potri.012G092200 [exp] 60 / 2e-10 AT1G14870 164 / 2e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.012G060900 [exp] 61 / 7e-10 AT1G49030 199 / 2e-62 PLAC8 family protein (.1) Potri.010G108900 [exp] 54 / 3e-08 AT1G14870 142 / 4e-43 PLANT CADMIUM RESISTANCE 2 (.1) Potri.010G109100 [exp] 54 / 3e-08 AT1G14870 165 / 1e-52 PLANT CADMIUM RESISTANCE 2 (.1) Potri.007G042800 [exp] 52 / 7e-08 AT1G14870 152 / 7e-48 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132900 [exp] 52 / 1e-07 AT1G14870 189 / 7e-62 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132775 [exp] 51 / 2e-07 AT1G14870 185 / 2e-60 PLANT CADMIUM RESISTANCE 2 (.1) Potri.008G132850 [exp] 50 / 5e-07 AT1G14870 184 / 6e-60 PLANT CADMIUM RESISTANCE 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025955 [exp] 656 / 0 AT4G35920 621 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10014256 [exp] 653 / 0 AT4G35920 625 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10028421 [exp] 641 / 0 AT4G35920 634 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10041875 [exp] 635 / 0 AT4G35920 624 / 0.0 mid1-complementing activity 1, PLAC8 family protein (.1.2.3) Lus10043325 [exp] 52 / 1e-07 AT1G14870 187 / 4e-61 PLANT CADMIUM RESISTANCE 2 (.1) Lus10004063 [exp] 50 / 2e-07 AT1G68630 132 / 2e-40 PLAC8 family protein (.1) Lus10019478 [exp] 50 / 4e-07 AT1G14870 184 / 7e-60 PLANT CADMIUM RESISTANCE 2 (.1) Lus10005257 [exp] 45 / 4e-05 AT2G40935 228 / 6e-77 PLAC8 family protein (.1.2.3) Lus10008890 [exp] 43 / 7e-05 AT1G68630 119 / 6e-35 PLAC8 family protein (.1) Lus10021696 [exp] 43 / 0.0001 AT1G14870 177 / 5e-57 PLANT CADMIUM RESISTANCE 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04749 [poplar] [flax] PLAC8 PLAC8 family
Representative CDS sequence Show only first row Show all	>Potri.005G110000.2 pacid=42803316 polypeptide=Potri.005G110000.2.p locus=Potri.005G110000 ID=Potri.005G110000.2.v4.1 annot-version=v4.1 ATGGCAACGTGGGAGCATCTTGGGGAGGTGGCAAATGTGGTCCAGCTGACGGGCATTGATGCAGTGCGGTTAATAGCCATGATAGGTAAAGCTGCAACTA CAGCACGGATGCACAAGAAGAATTGCCGGCAGTTTGCACAGCATTTGAAGTTGATTGGGAACTTGTTGGAGCAGTTGAAGATCTCGGAGCTTAAGAGGTA TCCGGAAACGCGGGAACCATTGGAGCAGCTTGAAGATGCTTTGAGAAGAAGTTATCTTTTGGTCAACAGTTGTCAGGATAGGAGCTATCTTTACTTGCTT GCAATGGGGTGGAACATTGTGTATCAATTTAGAAAGGCACAGAATGAGATTGATCGGTACTTGCGGCTTGTTCCTCTCATTACTCTTGTGGATAATTCTC GAGTCCGGGAGAGACTGGAATATATTGAAAGGGATCAACGTGAGTACACATTGGATGACGAGGACAGAAGGGTGCAAGATGTTATCCTGAAACCAGATTG CTCAGGAGAACACACCACGATGTTGAAAAAGACTCTCTCTTGTTCCTATCCAAACATGTGTTTTAATGAAGCACTACGAAAGGAAAATGAGAAGCTTCAG CTTGAACTACAAAGATCGCAAGCACATTTGGATGTGAACCAATGTGAAGTAATTCAGCATTTGATTGAGGTCACAGAAGTTGCTGCTGCAAGTTCTCTTC CGGAGAAGAGTTCATCAACAAAAAGTTCTAAGAAACTGGAGCCTGCATATTCAGATGCTAGTGAGAACAAACATTCTTTTGATGACAGCTATAGTACAAA AAGTGATTCTCACAAAACTTCAAGAAACACTTCCTCAGTTTCATCAAGAGATGATCTGCTGTCAAGTAGAGGGTCACATCAGCAAGAAGAATGGCATGCA GATTTACTCGGTTGCTGTTCAGAGCCATATCTGTGTATAAAGACTTTATTCTATCCTTGTGGTACATTTGCAAAGATTGCTACTGTGGCAAAGAACAGGC ATATATCCTCAGCGGAAGCTTGTAATGAATTGATGGCATATTCAATGATGTTGTCGTGTTGTTGCTATACTTGCTGTGTTAGAAGGGAGCTTCGCAAAAC ATTGAATATCACGGGAGGGTTTATTGACGATTTCCTCTCGCATTTGATGTGTTGTTGCTGTGCCCTTGTGCAAGAATGGCGAGAAGTGGAGATTCGTGGG GTTTATGGTCCCGAGAAGACAAAAACAAGCCCGCCTCCGTCTCAGTTCATGGAATCTTAA
AA sequence Show only first row Show all	>Potri.005G110000.2 pacid=42803316 polypeptide=Potri.005G110000.2.p locus=Potri.005G110000 ID=Potri.005G110000.2.v4.1 annot-version=v4.1 MATWEHLGEVANVVQLTGIDAVRLIAMIGKAATTARMHKKNCRQFAQHLKLIGNLLEQLKISELKRYPETREPLEQLEDALRRSYLLVNSCQDRSYLYLL AMGWNIVYQFRKAQNEIDRYLRLVPLITLVDNSRVRERLEYIERDQREYTLDDEDRRVQDVILKPDCSGEHTTMLKKTLSCSYPNMCFNEALRKENEKLQ LELQRSQAHLDVNQCEVIQHLIEVTEVAAASSLPEKSSSTKSSKKLEPAYSDASENKHSFDDSYSTKSDSHKTSRNTSSVSSRDDLLSSRGSHQQEEWHA DLLGCCSEPYLCIKTLFYPCGTFAKIATVAKNRHISSAEACNELMAYSMMLSCCCYTCCVRRELRKTLNITGGFIDDFLSHLMCCCCALVQEWREVEIRG VYGPEKTKTSPPPSQFMES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35920		MCA1	mid1-complementing activity 1,...		Potri.005G110000 [exp]	0	1
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.011G131900 [exp]	8.48	0.8909	ATK2.1
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252500 [exp]	12.08	0.9023
AT4G10955			alpha/beta-Hydrolases superfam...		Potri.003G141100 [exp]	13.11	0.8926
AT5G37478			TPX2 (targeting protein for Xk...		Potri.017G144061 [exp]	15.32	0.8885
AT1G16860			Ubiquitin-specific protease fa...		Potri.008G006100 [exp]	15.90	0.8668
AT2G47010			unknown protein		Potri.019G076900 [exp]	16.73	0.8770
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	19.18	0.8897
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	20.49	0.8848
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	20.71	0.8749
AT5G01090			Concanavalin A-like lectin fam...		Potri.006G094900 [exp]	23.91	0.8507

Compare expression of checked genes

Potri.005G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.