Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66110 189 / 1e-62 HIPP27 heavy metal associated isoprenylated plant protein 27, Heavy metal transport/detoxification superfamily protein (.1) AT4G38580 189 / 2e-62 HIPP26, ATFP6 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) AT4G35060 167 / 1e-53 HIPP25 heavy metal associated isoprenylated plant protein 25, Heavy metal transport/detoxification superfamily protein (.1) AT1G71050 153 / 3e-48 HIPP20 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) AT1G22990 153 / 3e-48 HIPP22 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) AT5G17450 152 / 4e-48 HIPP21 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) AT4G39700 130 / 5e-39 Heavy metal transport/detoxification superfamily protein (.1) AT4G08570 119 / 5e-35 Heavy metal transport/detoxification superfamily protein (.1) AT1G06330 96 / 2e-25 Heavy metal transport/detoxification superfamily protein (.1) AT2G18196 85 / 3e-21 Heavy metal transport/detoxification superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G175400 [exp] 199 / 2e-66 AT4G38580 254 / 2e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.009G135300 [exp] 194 / 2e-64 AT4G38580 234 / 3e-80 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.010G114600 [exp] 160 / 5e-51 AT1G22990 194 / 9e-65 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Potri.017G123400 [exp] 157 / 5e-50 AT5G17450 220 / 4e-75 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Potri.007G087300 [exp] 149 / 7e-47 AT4G39700 215 / 9e-73 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G135201 [exp] 139 / 2e-43 AT4G38580 167 / 8e-55 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Potri.005G079800 [exp] 138 / 2e-42 AT4G39700 189 / 2e-62 Heavy metal transport/detoxification superfamily protein (.1) Potri.005G167000 [exp] 128 / 2e-38 AT4G08570 229 / 1e-78 Heavy metal transport/detoxification superfamily protein (.1) Potri.002G092200 [exp] 128 / 2e-38 AT4G08570 193 / 3e-64 Heavy metal transport/detoxification superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028426 [exp] 217 / 2e-73 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10041879 [exp] 217 / 2e-73 AT4G38580 228 / 4e-78 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10014120 [exp] 181 / 2e-59 AT4G38580 253 / 5e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10019789 [exp] 181 / 5e-59 AT4G38580 254 / 4e-88 HEAVY METAL ASSOCIATED ISOPRENYLATED PLANT PROTEIN 26, farnesylated protein 6 (.1) Lus10009115 [exp] 163 / 4e-52 AT5G17450 206 / 5e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Lus10028531 [exp] 161 / 2e-51 AT5G17450 207 / 1e-69 heavy metal associated isoprenylated plant protein 21, Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016708 [exp] 160 / 4e-51 AT1G71050 192 / 1e-63 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10042946 [exp] 159 / 2e-50 AT1G71050 196 / 3e-65 heavy metal associated isoprenylated plant protein 20, Heavy metal transport/detoxification superfamily protein (.1) Lus10036004 [exp] 159 / 2e-50 AT1G22990 187 / 4e-62 heavy metal associated isoprenylated plant protein 22, Heavy metal transport/detoxification superfamily protein (.1) Lus10019676 [exp] 151 / 1e-47 AT4G39700 211 / 3e-71 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00403 [poplar] [flax] HMA Heavy-metal-associated domain
Representative CDS sequence Show only first row Show all	>Potri.005G110400.1 pacid=42802572 polypeptide=Potri.005G110400.1.p locus=Potri.005G110400 ID=Potri.005G110400.1.v4.1 annot-version=v4.1 ATGGGGTGTCTGGATCGCATCTCCGAACTCTGTGACTGGCCCCATGATAGCACGGGACTCAGAAAACGCGAGCCATTAGAGACAGTGGAGATTAAAGTGA AAATGGACTGTGAAGGGTGTGAGACAAAGGTGAGAAACTCAGTGACAGGGATGAAAGGAGTGATCCAAGTAGAAGTGGACCGCAAACTACAGAAACTGAC GGTGACCGGATACGTGGACCCGGACGAGGTCTTGCACCGTGTGAGGTATAGAACGGGAAAGAAAGCTGAGTTCTGGCCGTATGTGCCGGCTGAGGTAGTC CCTCTCCCATACTCCCCTGGAGTGTATGATAAGAAAGCCCCACCTGGGTACGTCCGAAATCCGCTTCAGCTCGAGGACCCACAGGCCTCTTCTATTGCAA GTGCCGGTTCTTTCGAGGTGAAGACCACTACAGCTTTCAGTGATGATAATCCAAATGCTTGTGTGATAATGTGA
AA sequence Show only first row Show all	>Potri.005G110400.1 pacid=42802572 polypeptide=Potri.005G110400.1.p locus=Potri.005G110400 ID=Potri.005G110400.1.v4.1 annot-version=v4.1 MGCLDRISELCDWPHDSTGLRKREPLETVEIKVKMDCEGCETKVRNSVTGMKGVIQVEVDRKLQKLTVTGYVDPDEVLHRVRYRTGKKAEFWPYVPAEVV PLPYSPGVYDKKAPPGYVRNPLQLEDPQASSIASAGSFEVKTTTAFSDDNPNACVIM

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66110		HIPP27	heavy metal associated isopren...		Potri.005G110400 [exp]	0	1
					Potri.016G032550 [exp]	1.41	0.9944
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Potri.008G152000 [exp]	3.46	0.9931
AT1G77780			Glycosyl hydrolase superfamily...		Potri.010G088500 [exp]	3.46	0.9943
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.001G449000 [exp]	6.24	0.9831
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.004G184100 [exp]	6.48	0.9867
AT1G71350			eukaryotic translation initiat...		Potri.013G096600 [exp]	12.00	0.9790
AT5G01030			Protein of unknown function (D...		Potri.016G105500 [exp]	12.64	0.9842
AT4G01290			unknown protein		Potri.004G073400 [exp]	13.56	0.9920
AT5G63830			HIT-type Zinc finger family pr...		Potri.001G085800 [exp]	13.63	0.9624
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Potri.006G081001 [exp]	14.07	0.9840

Compare expression of checked genes

Potri.005G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.