Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G26000 604 / 0 BRIZ2 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) AT2G42160 411 / 9e-140 BRIZ1 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) AT2G27160 86 / 5e-20 unknown protein AT1G72220 49 / 5e-06 RING/U-box superfamily protein (.1) AT1G72310 46 / 4e-05 ATL3 RING/U-box superfamily protein (.1) AT2G47560 45 / 4e-05 RING/U-box superfamily protein (.1) AT3G60966 44 / 5e-05 RING/U-box superfamily protein (.1) AT2G39100 45 / 6e-05 RING/U-box superfamily protein (.1) AT4G17905 45 / 7e-05 ATL4H RING/U-box superfamily protein (.1) AT5G05810 44 / 0.0002 ATL43 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G063900 [exp] 795 / 0 AT2G26000 600 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Potri.018G128100 [exp] 432 / 3e-148 AT2G42160 621 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Potri.003G184800 [exp] 49 / 2e-06 AT2G37580 120 / 6e-34 RING/U-box superfamily protein (.1) Potri.009G090100 [exp] 47 / 6e-06 AT2G14830 193 / 3e-64 Regulator of Vps4 activity in the MVB pathway protein (.1.2) Potri.017G038300 [exp] 45 / 3e-05 AT4G26400 68 / 2e-13 RING/U-box superfamily protein (.1.2) Potri.001G101700 [exp] 45 / 4e-05 AT5G41350 142 / 2e-42 RING/U-box superfamily protein (.1) Potri.019G091400 [exp] 45 / 4e-05 AT2G42360 143 / 9e-42 RING/U-box superfamily protein (.1) Potri.010G168300 [exp] 45 / 6e-05 AT1G26800 195 / 4e-63 RING/U-box superfamily protein (.1) Potri.005G036800 [exp] 45 / 9e-05 AT3G05200 261 / 7e-84 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035023 [exp] 627 / 0 AT2G26000 631 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10021683 [exp] 553 / 0 AT2G26000 565 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 2, zinc finger (C3HC4-type RING finger) family protein (.1), zinc finger (C3HC4-type RING finger) family protein (.2) Lus10038095 [exp] 439 / 1e-150 AT2G42160 684 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10006651 [exp] 429 / 6e-147 AT2G42160 674 / 0.0 BRAP2 RING ZnF UBP domain-containing protein 1, zinc finger (ubiquitin-hydrolase) domain-containing protein (.1) Lus10005617 [exp] 45 / 1e-05 AT5G42200 108 / 6e-31 RING/U-box superfamily protein (.1) Lus10017253 [exp] 44 / 3e-05 AT5G42200 126 / 4e-38 RING/U-box superfamily protein (.1) Lus10027736 [exp] 44 / 9e-05 AT4G17905 89 / 8e-22 RING/U-box superfamily protein (.1) Lus10043426 [exp] 44 / 0.0001 AT4G40070 84 / 5e-19 RING/U-box superfamily protein (.1) Lus10034551 [exp] 42 / 0.0001 AT5G42200 112 / 2e-32 RING/U-box superfamily protein (.1) Lus10000333 [exp] 44 / 0.0002 AT3G05200 309 / 2e-102 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF02148 [poplar] [flax] zf-UBP Zn-finger in ubiquitin-hydrolases and other protein CL0221 [poplar] [flax] RRM PF07576 [poplar] [flax] BRAP2 BRCA1-associated protein 2 CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G110500.2 pacid=42802488 polypeptide=Potri.005G110500.2.p locus=Potri.005G110500 ID=Potri.005G110500.2.v4.1 annot-version=v4.1 ATGTCACCTAGTTCAAGCGCTGCTGCAGTCAGCGGGGCCACACTGGAGGACCACTTCTGGCAACCAACAGCCGAGGAATCATCATCGTCAACTAATGAGG CATTTCCCTTCTCCTCTGGAAACCCTAGGATCGAAGAGACACGAGGCGTTATGCACCTTTTCTCCAACAATGGCATTTCAGATCTCCCTGTCGAAAGGAA ACCTCTAGTGGCAGTGGTTGGAGTGCCAAACCACATGACTTATGCTGACTTCTGCCAGTTTTGTGCTTCTTTCATTCACCACATTCTGGAGATGCGAATT GTTAGGTTAGATGGAATGGAGGATCGTTATAGTATTCTTATAAGATTTGATACTCAAGACTCCACTGATAAATTCTATCTTCATTTTAATGGTAGACAAT TCAATTCTTTGGAGGAGGAAGTTTGCCGGGTGCTTTTCACTGTTGATGTCCAGTTCACTGGTTACAGTGGTTCACTTGAACACACAAAGCCATCTCCAAC AAGCACAACTGAGCAGCCTTCTTGTCCAGTTTGTCTTGAGAGGCTAGACCAAGACATGGGTGGAATTCTCACAACTATATGTAATCATTCTTTCCACTGC TCTTGCATTTCAAAATGGACTGATTCTTCTTGTCCGGTTTGCCGATATTGCCAGCAACAACCTGAGAAATCAATTTGTTTTGTATGTCAAACTTCTGAGA ATCTATGGATTTGTGTTTTATGTGGTTTTGTTGGCTGTGGCAGGTATAAAGGAGGACATGCTATACGACATTGGAAAGAAACACAACACTGTTATTCACT TGAATTGGACACACAGCGTGTTTGGGATTATGTTGGTGACAATTATGTTCACCGACTGATTCAATCAAAAACTGATGGGAAGTTAGTTGAGTTGAATTCC CACTGTGTGCATGCTTATGATGGTTGTGGAGGTTGTGAGTGTGCAGACTCTGGAGTTAGCGAGGCTCTTTTGAAAAGCAAAGTTGAAGCAATTGTCAATG AGTACAATGAACTCCTTGCCACCCAGCTTGAGAACCAAAAGCTTTATTTTGATACTTTGCTCGAAGAAGTCAAAGAAGAAACTGAAAGAGAAATTTCTGA AGCTGTTAAGAAGGCTATTGCTCAAAAACTGCAGAAGTTGCAGGCCAAGCTGGATAGATGTATAAAAGAGAAGAAGTTTCTTGATGATCTCAATGAGAAT CTAGTGAAAAATCAGGAGATATGGAAAGCAAAGATATCGGAAATCGAAGAGAGGGAGAAAATGGCTTTGAAAATAAAGGACGATAAAATTCAGGACTTGG AAGAACAGCTTAGGGACTTGATGATGTCCCTCGAAGCAGGGAAGAAAGTGGAGCAGCAGCTATCTATACCAAATGAATTGAAGGATGGAACTGTATTACC AATATCAGTGGAATCGTCTTCAGGGAAGGGTCCCAAGGGACGCAAAAAGGCTAATAACCCAAGAGAGAGCTAA
AA sequence Show only first row Show all	>Potri.005G110500.2 pacid=42802488 polypeptide=Potri.005G110500.2.p locus=Potri.005G110500 ID=Potri.005G110500.2.v4.1 annot-version=v4.1 MSPSSSAAAVSGATLEDHFWQPTAEESSSSTNEAFPFSSGNPRIEETRGVMHLFSNNGISDLPVERKPLVAVVGVPNHMTYADFCQFCASFIHHILEMRI VRLDGMEDRYSILIRFDTQDSTDKFYLHFNGRQFNSLEEEVCRVLFTVDVQFTGYSGSLEHTKPSPTSTTEQPSCPVCLERLDQDMGGILTTICNHSFHC SCISKWTDSSCPVCRYCQQQPEKSICFVCQTSENLWICVLCGFVGCGRYKGGHAIRHWKETQHCYSLELDTQRVWDYVGDNYVHRLIQSKTDGKLVELNS HCVHAYDGCGGCECADSGVSEALLKSKVEAIVNEYNELLATQLENQKLYFDTLLEEVKEETEREISEAVKKAIAQKLQKLQAKLDRCIKEKKFLDDLNEN LVKNQEIWKAKISEIEEREKMALKIKDDKIQDLEEQLRDLMMSLEAGKKVEQQLSIPNELKDGTVLPISVESSSGKGPKGRKKANNPRES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G26000		BRIZ2	BRAP2 RING ZnF UBP domain-cont...		Potri.005G110500 [exp]	0	1
AT4G35140			Transducin/WD40 repeat-like su...		Potri.004G178700 [exp]	4.24	0.6996
AT4G32640			Sec23/Sec24 protein transport ...		Potri.005G049100 [exp]	12.84	0.6529	CEF.1
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Potri.010G170700 [exp]	19.07	0.6773
AT5G55060			unknown protein		Potri.011G089300 [exp]	26.83	0.6298
AT1G65950			Protein kinase superfamily pro...		Potri.004G075100 [exp]	29.59	0.6705
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	30.74	0.6064
AT5G11790		NDL2	N-MYC downregulated-like 2 (.1...		Potri.018G054900 [exp]	31.17	0.6080
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.002G081600 [exp]	33.67	0.6425	UBP26.1
					Potri.010G148450 [exp]	51.53	0.6138
AT1G35470			SPla/RYanodine receptor (SPRY)...		Potri.019G080800 [exp]	61.02	0.5574

Compare expression of checked genes

Potri.005G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.