Plant FIBer expression Database

Potri.005G110900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66120 624 / 0 3-dehydroquinate synthase, putative (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028429
[exp]
618 / 0 AT5G66120 640 / 0.0 3-dehydroquinate synthase, putative (.1.2)
Lus10041882
[exp]
597 / 0 AT5G66120 604 / 0.0 3-dehydroquinate synthase, putative (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0224 DHQS PF13685 Fe-ADH_2 Iron-containing alcohol dehydrogenase
Representative CDS sequence
>Potri.005G110900.1 pacid=42804450 polypeptide=Potri.005G110900.1.p locus=Potri.005G110900 ID=Potri.005G110900.1.v4.1 annot-version=v4.1
ATGACTTCCACGGCCAACACCATCTCCCTCTCTCTCCCCACCACCCACAACCCCTCGTCTCTCTCAAAACCCAAGTCCCTCCCCGATTTCTACCTCCGGT
TCCGTAACCAAAACCCAAAATTAACCCGGGTCGGAATCTCTGTAACAAACCCGAACAACCGAATTAGAACTTTATCAACAATCCGTGCAAGTACAGCTTC
AGTGATGGAAGCGAGTTCGAAAGAGAAAGCTTTGCCTACAATAGTGGAAGTTGATTTGGGCAACCGAAGTTACCCGATTTATATTGGATCGGGGCTATTG
GATCAACCCGAGTTGCTTCAAAGACATGTCCATGGGAAGAGAGTTCTTGTTGTTACTAACAGTACTGTGGCTCCTTTGTATCTTGATAAAGTTGTTGATG
CTCTAACAAGAGGGAATCCTAATGTTTCTGTTGACATTGTGATTCTACCTGATGGTGAAAAGTACAAGAATATGGAAACACTTATGAAAGTGTTTGATAA
AGCAATTGAGTCAAGGTTGGACAGGAGGTGTACGTTTGTTGCGCTTGGAGGTGGTGTGATTGGTGATATGTGTGGATTTGCAGCGGCATCTTTTCTTCGA
GGTGTTAACTTTATTCAGATTCCTACAACTGTTATGGCACAGGTGGACTCTTCTGTTGGAGGCAAAACTGGGATTAACCACCCACTCGGGAAGAATTTGA
TCGGTGCATTTTATCAACCTCAATGTGTGTTGATAGATACTGACACACTTAATACCTTGCCGGATAGGGAATTGGCATCAGGGCTTGCAGAGGTTATTAA
ATATGGGCTTATTAGAGATGCAGTGTTTTTTGAGTGGCAGGAGAAGAATATTGCGGCTTTGATGGCAAGGGATCCAAGTGCCATGGCCTATGCCATCAAG
CGTTCATGTGAAAATAAGGCTGAGGTTGTATCCTTGGATGAGAAGGAAAGTGGACTGAGGGCAACTTTGAACCTGGGTCACACATTTGGCCATGCAATAG
AAACAGGATTTGGATATGGTGTGTGGCTCCATGGAGAAGCTGTTGCAGCTGGCATGGTCATGGCTGTTGACATGTCATACCGCCTTGGTTGGATTGATGA
TATGCTTGTGAAGCGTGTCCTCAACATTCTACAACAGGCGAAGCTACCCACTGCTCCACCAGATACCATCACCGTGGAAATGTTCAAGTCTGTGATGGCG
GTCGATAAGAAGGTAGCAGATGGGTTGCTAAGGCTTATCCTTTTGAAAGGCTCCCTGGGTAATTGTGTGTTCACCGGTGATTATGATAGGAAGGCCCTCG
ATGATACACTTCGTGCATTTTGCAAATCATGA
AA sequence
>Potri.005G110900.1 pacid=42804450 polypeptide=Potri.005G110900.1.p locus=Potri.005G110900 ID=Potri.005G110900.1.v4.1 annot-version=v4.1
MTSTANTISLSLPTTHNPSSLSKPKSLPDFYLRFRNQNPKLTRVGISVTNPNNRIRTLSTIRASTASVMEASSKEKALPTIVEVDLGNRSYPIYIGSGLL
DQPELLQRHVHGKRVLVVTNSTVAPLYLDKVVDALTRGNPNVSVDIVILPDGEKYKNMETLMKVFDKAIESRLDRRCTFVALGGGVIGDMCGFAAASFLR
GVNFIQIPTTVMAQVDSSVGGKTGINHPLGKNLIGAFYQPQCVLIDTDTLNTLPDRELASGLAEVIKYGLIRDAVFFEWQEKNIAALMARDPSAMAYAIK
RSCENKAEVVSLDEKESGLRATLNLGHTFGHAIETGFGYGVWLHGEAVAAGMVMAVDMSYRLGWIDDMLVKRVLNILQQAKLPTAPPDTITVEMFKSVMA
VDKKVADGLLRLILLKGSLGNCVFTGDYDRKALDDTLRAFCKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66120 3-dehydroquinate synthase, put... Potri.005G110900
[exp]
0 1
AT2G27920 SCPL51 serine carboxypeptidase-like 5... Potri.009G003100
[exp]
1.41 0.8547
AT1G11790 AtADT1, ADT1 Arabidopsis thaliana arogenate... Potri.011G004700
[exp]
4.47 0.7812
AT5G11960 Protein of unknown function (D... Potri.006G226000
[exp]
5.74 0.7702
AT5G26751 ATSK11 ,SK 11 ARABIDOPSIS THALIANA SHAGGY-RE... Potri.005G005400
[exp]
7.34 0.7146 MSK.3
AT2G23540 GDSL-like Lipase/Acylhydrolase... Potri.008G104700
[exp]
7.74 0.7411
AT5G11190 AP2_ERF SHN2, SHN3 shine2, Integrase-type DNA-bin... Potri.006G253800
[exp]
8.48 0.7516
AT4G00430 PIP1;4, TMP-C, ... TRANSMEMBRANE PROTEIN C, PLASM... Potri.016G113300
[exp]
8.48 0.7813
AT2G19760 PRF1, PFN1 profilin 1 (.1) Potri.001G190800
[exp]
14.49 0.7978 Pt-PRO1.1
AT4G26590 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPT... Potri.016G004800
[exp]
18.97 0.7509
AT1G13130 Cellulase (glycosyl hydrolase ... Potri.010G049800
[exp]
21.33 0.7091

Potri.005G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.