Plant FIBer expression Database

Potri.005G111000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G66130 607 / 0 ATRAD17 RADIATION SENSITIVE 17 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028430
[exp]
628 / 0 AT5G66130 532 / 0.0 RADIATION SENSITIVE 17 (.1)
Lus10041883
[exp]
87 / 5e-20 AT5G66130 63 / 3e-12 RADIATION SENSITIVE 17 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF03215 Rad17 Rad17 P-loop domain
Representative CDS sequence
>Potri.005G111000.1 pacid=42803357 polypeptide=Potri.005G111000.1.p locus=Potri.005G111000 ID=Potri.005G111000.1.v4.1 annot-version=v4.1
ATGAGGAAGATAAGAGACACTAATCTGATGATTCTATCATCAGATGATGAAGACGATTGTGATTACAAACCGAACTCACATCGAAGCTATACAAAGAAGC
CAAAATCTAGATCGTTTATTACTCGTACAAACCCTAGACAGCCAAAGAAGCCTCGTGTTTCGGGTTCTCGGTCTCGATTTAGCAGAGACTCCCCTAATTT
ATTTGAGGTTGGGTTTCCTGAAGAAGATTTTGAAGAATTGTTTTCTGGGTCCAAGGTATCTGCTGGTTCTGGAAGAAGCAACGTAAAGGAATTGTGGGTT
GATAAGCATAAACCTCAGTCCTTGGAAGAACTTGCTGTTCACAAGAAGAAGGTTGAAGAAGTTAAATCGTGGTTTGAAGAAAGGTTAAAAACTACAAAGA
ATTTGCAGGGCAATTTGATAAATAATGTTGTTGTCATCAATGGAAAAGCTGGTGTTGGAAAATCTACAACTATCCAAGTGATTGCATCCCATTTTGGAGC
TAGATTATGCGAATGGAACACACCTACTCCCACAATTTGGCAGGAACATGTGCACAATACCAATACAGGAATACAGTATACATCCAAGTTGGATGAATTT
GTAAATTTCATTGAGAAAATCAGGAAGTATGGATTAATCCCATCATCCTCTTCTGAGGACGTGAAACCATCAATTATACTCTTAATTGATGACCTTCCTA
TGACGAATGGAAGAGTTGCTTTTGAAAGACTCCAAAGCTGCTTGCTTCATCTTGTGAGATCAACTCAGTTACCGACAGCTATACTGGTATCAGATTATGA
TGAAGCAGATTCAGCAGATCATACAGCACGACGTTTGGAACAACTTCAGTTGTCTCTTGAGAATGCTGGGGCTTGTAAGGTTTCTTTTAACCCTATTACA
AATAACTCCATCAAGAAGACGCTCAGTAGAATATGCAGACAGGAGCAGTGTAGTGTAACTGATGAACAACTTGATCTGATAGCAAAAGGCAGTGGAGGTG
ATATAAGACATGCAATTACCTCTTTGCAGCTCTTTTGTGTGAAACCAGATCTAGTGCTCAATGGTTCCTATTCTACTCCAAGTTACTTGTATGGAAAAGA
AGATGATATTGATGCTTTAGTTAGTGGAATTTCATTGTTATTTGGCAGAGATGAGACCCTCTCTCTATTTCATGCACTGGGAAAGTTTCTGCACAACAAA
AGAGAAACTGAAGTTGCCAATGCTATTACACCCGGAGATGCATTCCTTGTGCAGGAGAATTTCTCCAGGTTACCATTGAAAATGGATGCTCCAGAAAAGG
TTCTTTGTCAAGCACATGGGCAAGCCAGGCCAGTCACTGATTTCTTGCATGAAAACGTGCTGGATTTTATAAGTGATGAAGCAATGGATGATGCCTGGCA
TGTTTCTTCATACTTTAGTGATTCCGACTTGCTTCTCTCTTCATTCCGAGGAATGTTGGCTAGATATAATGAGGCAGAAAATGTTCTCCAATCAGCTGCT
GCTTCAGTTGCTGTTCGTGGGGTGCTATTTGGAAATTCTCATCCTTCACCTCCCAGATGGCATGCTATCCGGAAGCCAAAGCTCTGGCAGGTTGAAAAAT
CAATGCTGCACAATCAGAAAGAGATAGTAAGACAGAGATTTATTGCTTATAATGGATCCAGCTCTTGTAATGTGTCAGATGTAGCTACTGAGTACATGCC
TTTGTTGAAATGGCTTGAACATAGAGCATCTGGTTTTGAAGATAATCAGGCACTTGTGTACTGCAAGAAGACAGACGGCGAGAGTTGTGATAGGATGAGT
TTAGATGACAAAGAAAGTGATATATCTGATGATGAAATAGAAGAGTGGTAA
AA sequence
>Potri.005G111000.1 pacid=42803357 polypeptide=Potri.005G111000.1.p locus=Potri.005G111000 ID=Potri.005G111000.1.v4.1 annot-version=v4.1
MRKIRDTNLMILSSDDEDDCDYKPNSHRSYTKKPKSRSFITRTNPRQPKKPRVSGSRSRFSRDSPNLFEVGFPEEDFEELFSGSKVSAGSGRSNVKELWV
DKHKPQSLEELAVHKKKVEEVKSWFEERLKTTKNLQGNLINNVVVINGKAGVGKSTTIQVIASHFGARLCEWNTPTPTIWQEHVHNTNTGIQYTSKLDEF
VNFIEKIRKYGLIPSSSSEDVKPSIILLIDDLPMTNGRVAFERLQSCLLHLVRSTQLPTAILVSDYDEADSADHTARRLEQLQLSLENAGACKVSFNPIT
NNSIKKTLSRICRQEQCSVTDEQLDLIAKGSGGDIRHAITSLQLFCVKPDLVLNGSYSTPSYLYGKEDDIDALVSGISLLFGRDETLSLFHALGKFLHNK
RETEVANAITPGDAFLVQENFSRLPLKMDAPEKVLCQAHGQARPVTDFLHENVLDFISDEAMDDAWHVSSYFSDSDLLLSSFRGMLARYNEAENVLQSAA
ASVAVRGVLFGNSHPSPPRWHAIRKPKLWQVEKSMLHNQKEIVRQRFIAYNGSSSCNVSDVATEYMPLLKWLEHRASGFEDNQALVYCKKTDGESCDRMS
LDDKESDISDDEIEEW

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G66130 ATRAD17 RADIATION SENSITIVE 17 (.1) Potri.005G111000
[exp]
0 1
AT2G24170 Endomembrane protein 70 protei... Potri.006G184200
[exp]
3.46 0.5809
AT3G01100 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETI... Potri.004G115800
[exp]
11.83 0.5963 HYP1.1
AT3G05940 Protein of unknown function (D... Potri.005G000300
[exp]
15.16 0.6410
AT1G03530 ATNAF1 nuclear assembly factor 1 (.1) Potri.019G104400
[exp]
15.29 0.5788
AT5G20590 TBL5 TRICHOME BIREFRINGENCE-LIKE 5 ... Potri.018G133000
[exp]
21.02 0.6354
AT1G49890 QWRF2 QWRF domain containing 2, Fami... Potri.002G119500
[exp]
27.85 0.5928
AT4G00800 SETH5 transducin family protein / WD... Potri.014G105601
[exp]
49.92 0.5911
AT3G61600 ATPOB1 POZ/BTB containin G-protein 1 ... Potri.001G096100
[exp]
55.31 0.5468
AT3G51390 DHHC-type zinc finger family p... Potri.005G104800
[exp]
59.17 0.5010
AT5G10790 UBP22 ubiquitin-specific protease 22... Potri.018G123200
[exp]
60.99 0.5424

Potri.005G111000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.