Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66160 264 / 5e-88 JR700, ATRMR1 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) AT1G71980 181 / 8e-54 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G22670 162 / 4e-47 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT4G09560 155 / 6e-44 NHL22 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35630 147 / 3e-42 Protease-associated (PA) RING/U-box zinc finger family protein (.1) AT1G35625 89 / 3e-21 RING/U-box superfamily protein (.1) AT2G20030 69 / 4e-13 RING/U-box superfamily protein (.1) AT3G05200 67 / 1e-12 ATL6 RING/U-box superfamily protein (.1) AT2G27940 66 / 1e-12 RING/U-box superfamily protein (.1) AT4G09120 66 / 3e-12 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G082500 [exp] 183 / 1e-54 AT1G71980 449 / 3e-156 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.013G111500 [exp] 180 / 1e-53 AT1G71980 427 / 5e-147 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Potri.001G127100 [exp] 77 / 1e-15 AT5G45290 286 / 2e-89 RING/U-box superfamily protein (.1.2) Potri.003G106600 [exp] 75 / 5e-15 AT5G45290 320 / 4e-102 RING/U-box superfamily protein (.1.2) Potri.018G042501 [exp] 71 / 7e-14 AT2G20030 244 / 2e-77 RING/U-box superfamily protein (.1) Potri.018G085001 [exp] 70 / 3e-13 AT4G28890 290 / 2e-94 RING/U-box superfamily protein (.1) Potri.006G239500 [exp] 67 / 2e-12 AT2G20030 248 / 1e-78 RING/U-box superfamily protein (.1) Potri.002G153400 [exp] 65 / 2e-12 AT2G20030 83 / 8e-19 RING/U-box superfamily protein (.1) Potri.014G076800 [exp] 64 / 3e-12 AT4G10150 84 / 1e-19 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041896 [exp] 348 / 2e-120 AT5G66160 283 / 3e-94 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10028443 [exp] 345 / 2e-119 AT5G66160 286 / 6e-96 ARABIDOPSIS THALIANA RECEPTOR HOMOLOGY REGION TRANSMEMBRANE DOMAIN RING H2 MOTIF PROTEIN 1, receptor homology region transmembrane domain ring H2 motif protein 1 (.1.2) Lus10006074 [exp] 185 / 2e-55 AT1G71980 466 / 2e-162 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10016936 [exp] 167 / 1e-48 AT1G71980 483 / 1e-169 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10014823 [exp] 165 / 1e-46 AT1G71980 488 / 3e-168 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10009438 [exp] 114 / 8e-29 AT1G71980 329 / 1e-108 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10000053 [exp] 84 / 8e-20 AT1G71980 137 / 3e-39 Protease-associated (PA) RING/U-box zinc finger family protein (.1) Lus10012975 [exp] 68 / 1e-12 AT2G20030 291 / 2e-95 RING/U-box superfamily protein (.1) Lus10034953 [exp] 67 / 1e-12 AT2G20030 278 / 2e-90 RING/U-box superfamily protein (.1) Lus10004977 [exp] 65 / 6e-12 AT3G55530 371 / 1e-130 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0364 [poplar] [flax] Leu-IlvD PF02225 [poplar] [flax] PA PA domain CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.005G111100.7 pacid=42803570 polypeptide=Potri.005G111100.7.p locus=Potri.005G111100 ID=Potri.005G111100.7.v4.1 annot-version=v4.1 ATGAGAGAGGGTTTGTTTCTTATACTATCACTCTTTTACGCTATAATGATAATTGAAGGAAGTTCAGCGACTGTCCTTATAAAACCATCCTCCATTTCCT TCCCAGACCTTCCTGCTAAATCCGCTCTCAGCCTCAATGGCTCTAGTGTGTGTGGGTCGTTACACGTGGCAAACCCTCTGGACGCTTGTTCTCCGCTACG CAATCGTTTCGAGTTCAATGAAAGTGGGAGGTTTGCTTTGATAGTGAGAGGTGAATGTGCTTTCGAAGATAAGATTAAGAATGCCCAAAGTGCTGGTTTT CGTGCTGCCATTGTTTTTGATGATAAAGATAACAGGAATTTGATTTACATGATGGTGAATCCTGAGGGAATTAAGGTCCATGCGGTTTTTGTTTCAAAGT ATGCTGGGGAAATATTGAAGGATCGTGCACGAGGGAAAGAAGGGGAATGTTGCATTTATTCATCTCGTACTGATGCGGCATGGACTGTGTTGGCAATATC ATTGATTTCTGTTGTTGTTATTTTAGGTCTCCTTATCCTTGTTTTTGTTACTCCCAGACACTGGTTGCATTGGCAGCGAACAAATAATCGCTGTAAAAGT GTGGATAGTAAGATGGTAGAAGCCCTTCCGTGCTTCACATTCCGGAATGCTAGTTTAAGTCAGTGTCATGTTGGTGAAACTTGTGCGATTTGCCTTGAGG ATTATAAAGATGGGGAAGTTCTTAAAGTTCTCCCTTGTCACCATGAATTTCATTCAACCTGTGTTGACTCGTGGCTGACTAAGTGGGGGACCTTCTGTCC TGTGTGCAAGCTTGATATGAAAGATAAATCTGCATATTTTGGGATCAAAAGGTGA
AA sequence Show only first row Show all	>Potri.005G111100.7 pacid=42803570 polypeptide=Potri.005G111100.7.p locus=Potri.005G111100 ID=Potri.005G111100.7.v4.1 annot-version=v4.1 MREGLFLILSLFYAIMIIEGSSATVLIKPSSISFPDLPAKSALSLNGSSVCGSLHVANPLDACSPLRNRFEFNESGRFALIVRGECAFEDKIKNAQSAGF RAAIVFDDKDNRNLIYMMVNPEGIKVHAVFVSKYAGEILKDRARGKEGECCIYSSRTDAAWTVLAISLISVVVILGLLILVFVTPRHWLHWQRTNNRCKS VDSKMVEALPCFTFRNASLSQCHVGETCAICLEDYKDGEVLKVLPCHHEFHSTCVDSWLTKWGTFCPVCKLDMKDKSAYFGIKR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66160		JR700, ATRMR1	ARABIDOPSIS THALIANA RECEPTOR ...		Potri.005G111100 [exp]	0	1
AT1G53035			unknown protein		Potri.001G399900 [exp]	1.73	0.9604
AT1G67370		ASY1, ATASY1	ASYNAPTIC 1, DNA-binding HORMA...		Potri.001G055201 [exp]	2.00	0.9725
AT5G13500			unknown protein		Potri.001G028100 [exp]	2.44	0.9406
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.004G093500 [exp]	4.47	0.9515
					Potri.012G080700 [exp]	5.29	0.9192
					Potri.007G088800 [exp]	5.47	0.9507
AT1G30760			FAD-binding Berberine family p...		Potri.011G158800 [exp]	6.16	0.9092
AT3G14850		TBL41	TRICHOME BIREFRINGENCE-LIKE 41...		Potri.011G106300 [exp]	6.48	0.9040
AT4G22120			ERD (early-responsive to dehyd...		Potri.004G006100 [exp]	7.41	0.9205
AT5G16720			Protein of unknown function, D...		Potri.017G129200 [exp]	8.36	0.9223

Compare expression of checked genes

Potri.005G111100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.