Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17840 490 / 7e-172 ERD7 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) AT3G51250 485 / 1e-169 Senescence/dehydration-associated protein-related (.1) AT4G35985 449 / 2e-155 Senescence/dehydration-associated protein-related (.1) AT4G15450 183 / 2e-53 Senescence/dehydration-associated protein-related (.1) AT3G21600 157 / 2e-43 Senescence/dehydration-associated protein-related (.1.2) AT3G21590 59 / 8e-10 Senescence/dehydration-associated protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G174100 [exp] 475 / 5e-166 AT2G17840 472 / 7e-165 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.009G133500 [exp] 426 / 6e-147 AT2G17840 449 / 1e-156 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Potri.018G087500 [exp] 179 / 1e-51 AT4G15450 401 / 5e-139 Senescence/dehydration-associated protein-related (.1) Potri.006G164748 [exp] 150 / 7e-41 AT4G15450 332 / 3e-112 Senescence/dehydration-associated protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028439 [exp] 496 / 5e-174 AT3G51250 520 / 0.0 Senescence/dehydration-associated protein-related (.1) Lus10027840 [exp] 437 / 4e-148 AT2G17840 489 / 4e-169 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10014132 [exp] 412 / 4e-141 AT2G17840 476 / 1e-166 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10005067 [exp] 378 / 6e-128 AT2G17840 459 / 5e-160 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10041892 [exp] 327 / 3e-109 AT3G51250 358 / 9e-122 Senescence/dehydration-associated protein-related (.1) Lus10034499 [exp] 275 / 2e-90 AT2G17840 306 / 2e-103 EARLY-RESPONSIVE TO DEHYDRATION 7, Senescence/dehydration-associated protein-related (.1) Lus10012957 [exp] 166 / 3e-47 AT4G15450 321 / 1e-108 Senescence/dehydration-associated protein-related (.1) Lus10043028 [exp] 166 / 1e-46 AT4G15450 373 / 3e-128 Senescence/dehydration-associated protein-related (.1) Lus10011127 [exp] 157 / 3e-43 AT4G15450 382 / 8e-132 Senescence/dehydration-associated protein-related (.1) Lus10034498 [exp] 93 / 2e-22 AT3G51250 97 / 9e-25 Senescence/dehydration-associated protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06911 [poplar] [flax] Senescence Senescence-associated protein
Representative CDS sequence Show only first row Show all	>Potri.005G111600.1 pacid=42805514 polypeptide=Potri.005G111600.1.p locus=Potri.005G111600 ID=Potri.005G111600.1.v4.1 annot-version=v4.1 ATGGCATCTCAAAACCCTAATCAAAATTCGTCCCTCTACCCACAAATTATCCAATCAAAACCCGACCCTTTGTTCACCTCCTCCTCTCCATCCTCAAATC TCTACCCCAAAATTGATCCAGAAGACCTCGTCGAAAACCTTTTTCCTGGACATGATCATTCACAACACGAGTATCCACGCGCGCAGTCACACACTCAAGC GCCACCCTCCGCCCCACCGGAGGTTGTTGAGGAAGTCTTGATAAAGATCGCAGGTGCTATTGTTAATCTAATTGATAAAAACTATAGTGTAGAACTCGCT TCCGGCGATCTCTACATCGTTAGGCTCAGTCAAGGAAATAATGTTGTGGCTGTTCTGGCCCGTGTTGCTGATGAGATCCAATGGCCATTGGCTAAGGATG AGGCTGCTGTTAAGCTTGATGATTCTCATTATTTTTTCTCCCTTAGGTTTCCTAATGAGAATTACTCGTCAGATTCGAGCGACGAGGAGGATGATAAGAG GGAGAAAAGGGTTGATGGGGAGAATATATTGAATTATGGATTGACGATTGCGTCGAAAGGGCAAGAGAGGTTGTTGTTGGAGTTTGATCAGATCTTGGGG AGTTATAGTTGTTTTTCGGTGCAGAAAGTATCGGAGAATGCTAAGGAATTGTTGGGTGGAAATGCGGCCAAGGATACTTCGCCGATGGATATGAAGATAG GAGGGGAGAAGAAGGAGATTATGGAGGGGAAATGTGCTGCGTATTGGACTACATTGGCTCCTAATGTGGAGGATTATAGTGGGACTGCTGGTAAGTTGAT TGCTGCGGGGTCAGGGCAGCTGATTAAGGGGATTTTGTGGTGTGGTGATGTAACTATGGATAGGTTGAAGTGGGGGAATGAGGTTATGAAGAAGAGGATG GACCCGAAGGAGAAATCAGAGATTAGTCCTGCTACTTTGAAGAGGATCAAAAGGGCTAAGAGGATGACAAAAATGACCGAGAAAGTAGCAAATGGGCTTC TCTGCGGGGTGCTGAAAGTATCTGGATTTTTCACAAGTTCGCTTGTGAACTCAAAAGTTGGCAAGAAATTCTTTGGCCTTCTGCCAGGGGAAATTGTCCT TGCATCCCTTGATGGATTTAACAAGGTGTGTGATGCTCTTGAAGTAGCTGGACGAAATGTGATGTCAACATCGTCTACTGTGACAACTGAACTTGTCTCC CACAGGTATGGTGAAGAAGCAGCCAAAGCTACAAATGAAGGGCTTGGTGCTACAGGGCATGCAATTGGGACTGCATGGGCTGCATTCAAAATCCGAAAGG CATTTAATCCAAAAAGTGTACTGAAGCCCAGTTCACTGGCCAAATCTGCTGCTAAAGCTGCCGCCGCCGAGATGAAGGCAAAAAATTCCAAGTGA
AA sequence Show only first row Show all	>Potri.005G111600.1 pacid=42805514 polypeptide=Potri.005G111600.1.p locus=Potri.005G111600 ID=Potri.005G111600.1.v4.1 annot-version=v4.1 MASQNPNQNSSLYPQIIQSKPDPLFTSSSPSSNLYPKIDPEDLVENLFPGHDHSQHEYPRAQSHTQAPPSAPPEVVEEVLIKIAGAIVNLIDKNYSVELA SGDLYIVRLSQGNNVVAVLARVADEIQWPLAKDEAAVKLDDSHYFFSLRFPNENYSSDSSDEEDDKREKRVDGENILNYGLTIASKGQERLLLEFDQILG SYSCFSVQKVSENAKELLGGNAAKDTSPMDMKIGGEKKEIMEGKCAAYWTTLAPNVEDYSGTAGKLIAAGSGQLIKGILWCGDVTMDRLKWGNEVMKKRM DPKEKSEISPATLKRIKRAKRMTKMTEKVANGLLCGVLKVSGFFTSSLVNSKVGKKFFGLLPGEIVLASLDGFNKVCDALEVAGRNVMSTSSTVTTELVS HRYGEEAAKATNEGLGATGHAIGTAWAAFKIRKAFNPKSVLKPSSLAKSAAKAAAAEMKAKNSK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17840		ERD7	EARLY-RESPONSIVE TO DEHYDRATIO...		Potri.005G111600 [exp]	0	1
AT1G65320			Cystathionine beta-synthase (C...		Potri.019G052650 [exp]	13.96	0.7268
AT1G67190			F-box/RNI-like superfamily pro...		Potri.004G203300 [exp]	14.89	0.6955
AT4G29230	NAC	ANAC075, NST9	NAC domain containing protein ...		Potri.018G068700 [exp]	17.54	0.7384
AT3G11330		PIRL9	plant intracellular ras group-...		Potri.015G083800 [exp]	19.59	0.6460
AT2G31930			unknown protein		Potri.001G232200 [exp]	48.74	0.6868
AT5G01350			unknown protein		Potri.016G118800 [exp]	50.91	0.6296
AT3G22790			Kinase interacting (KIP1-like)...		Potri.010G083300 [exp]	54.22	0.6835
AT2G10950			BSD domain-containing protein ...		Potri.018G125400 [exp]	61.15	0.5865
AT4G24110			unknown protein		Potri.001G082500 [exp]	68.99	0.6060
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.005G063200 [exp]	89.95	0.6384

Compare expression of checked genes

Potri.005G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.