Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATHK1.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G17820 1434 / 0 AHK1, ATHK1 histidine kinase 1 (.1) AT2G47430 130 / 2e-30 CKI1 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) AT2G01830 117 / 4e-26 CRE1, AHK4, WOL1, WOL, ATCRE1 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) AT1G27320 111 / 2e-24 AHK3 histidine kinase 3 (.1) AT5G35750 94 / 3e-19 AHK2 histidine kinase 2 (.1) AT1G66340 91 / 4e-18 AtETR1, EIN1, ETR1 ETHYLENE RESPONSE 1, ETHYLENE RESPONSE, ETHYLENE INSENSITIVE 1, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1) AT2G40940 82 / 2e-15 ERS1 ethylene response sensor 1 (.1) AT3G04580 79 / 1e-14 EIN4 ETHYLENE INSENSITIVE 4, Signal transduction histidine kinase, hybrid-type, ethylene sensor (.1.2) AT5G10720 74 / 7e-13 CKI2, AHK5 CYTOKININ INDEPENDENT 2, histidine kinase 5 (.1) AT5G26594 49 / 1e-06 ARR24 response regulator 24 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056400 [exp] 2154 / 0 AT2G17820 1475 / 0.0 histidine kinase 1 (.1) Potri.014G121500 [exp] 140 / 3e-33 AT2G47430 753 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.008G191100 [exp] 134 / 3e-31 AT2G47430 746 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.013G009700 [exp] 118 / 1e-26 AT2G47430 572 / 0.0 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Potri.001G057400 [exp] 115 / 1e-25 AT1G27320 1384 / 0.0 histidine kinase 3 (.1) Potri.014G164700 [exp] 114 / 4e-25 AT5G35750 1359 / 0.0 histidine kinase 2 (.1) Potri.008G137900 [exp] 112 / 8e-25 AT2G01830 1390 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Potri.003G171000 [exp] 108 / 9e-24 AT1G27320 1425 / 0.0 histidine kinase 3 (.1) Potri.010G102900 [exp] 106 / 5e-23 AT2G01830 1381 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041891 [exp] 1585 / 0 AT2G17820 1561 / 0.0 histidine kinase 1 (.1) Lus10028438 [exp] 1355 / 0 AT2G17820 1553 / 0.0 histidine kinase 1 (.1) Lus10035114 [exp] 114 / 2e-27 AT2G47430 132 / 2e-34 CYTOKININ-INDEPENDENT 1, Signal transduction histidine kinase (.1) Lus10028992 [exp] 111 / 2e-24 AT2G01830 1337 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10031985 [exp] 111 / 3e-24 AT5G63890 752 / 0.0 HISTIDINE BIOSYNTHESIS 8, histidinol dehydrogenase (.1.2) Lus10003686 [exp] 110 / 3e-24 AT2G01830 1330 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10012325 [exp] 110 / 6e-24 AT5G35750 1278 / 0.0 histidine kinase 2 (.1) Lus10030772 [exp] 110 / 6e-24 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3) Lus10037032 [exp] 109 / 9e-24 AT1G27320 1094 / 0.0 histidine kinase 3 (.1) Lus10013250 [exp] 108 / 1e-23 AT2G01830 1282 / 0.0 WOODEN LEG 1, WOODEN LEG, CYTOKININ RESPONSE 1, ARABIDOPSIS HISTIDINE KINASE 4, CHASE domain containing histidine kinase protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0304 [poplar] [flax] CheY PF00072 [poplar] [flax] Response_reg Response regulator receiver domain CL0025 [poplar] [flax] His_Kinase_A PF00512 [poplar] [flax] HisKA His Kinase A (phospho-acceptor) domain CL0025 [poplar] [flax] His_Kinase_A PF02518 [poplar] [flax] HATPase_c Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Representative CDS sequence Show only first row Show all	>Potri.005G111700.2 pacid=42803064 polypeptide=Potri.005G111700.2.p locus=Potri.005G111700 ID=Potri.005G111700.2.v4.1 annot-version=v4.1 ATGGCAGAGGAAGGAGATCGTAGGAACTACTCTAGTACTGCTAGTTCTAATGATTGTTCACCTACTATAGGCACTGACACACCAATAATGGCAACTCCTT TGAGGAAAGTGTGTGCCAGAATTCTGGGTTTCGCCAGTTCTTGCAGAAAGAATACAGCTCCTTACGGTAGAAGAATTTTCTATAGAGATGTTGAACAAGA TGAGTTCCAGTATGGAAACACTCACTGTCTCTCCTCTTACTACAGTGTTTTTGTAGTTCGCCTGGCTATCATGGCCATGCTCGCAATTTTGATTGGTCTG CTAACAATACTAACATGGCATTTCACAAGAAGCTATACAAAAAAGTCGTTGGATACCTTAGCTTCTGGCCTTCGATATGAAATTCTGCAACGCCCGATAT TAAGAATGTGGAACATTTTGAATTCCACAGCTGAAATAACTGCAGCCCAGGTTAAGCTATCAGAGTATGTAATCAGACGGTACAGCAAGCCGACCAATCA AGCAGAGCAAGTGGAGGTTCTGTATGAAGTGATGAGGGATATAACATGGGCACTGTTTGCCAGCCGAAAAGCTCTCAATGCAATAACCATAAATTATAGA AATGGTTTTGTCCAGGCTTTCCACAGGGATCATAGGAGTAACAACACATTCTACATCTACTCTGATCTTGTGAACTACTCAATCAATGCCAAGGGACCTT ATGATACAAACATGTTCTCGTCGCATCAAGCATGGGATGATCAATCCATCCACAGTAACTTTTCAGCAATTTGGTATCGTGAACCACTTGATCCTATCTC AGGTGAAAAGAAAGGGAAAGCAAGTCCAATTCCACCAGATGATCTTATCAATATCGCAGGCCTTTCACAAGTACCTGATGGTGTGGCTTCATGGCATGTG GCAGTAAGCAAGTATACAGATTCACCTCTGCTTCAAGCAGCATTGCCTGTGTGGGATGCTTCCAATAAAAGCATCGTGGCCGTTGTAGGTGTTACTACTT CTCTCTACAGTGTTGGCCAATTGATGAGAGAGCTTGTTGAAGTCCATAGTGGATACATATATTTGACCTCTCAAGAGGGTTATTTACTGGCAACTTCCAC AAATGCTCCTCTACTAACAAACTCAACAACAAGACCAAATCTTATAATGGCTGTCGATACTGAGGAACCAATTATAAGAATGGGAGCTCGATGGCTGGAG AAAGTCTATGGAAACAAGTTAACTCCAGGTCAAATTGTTCAAGTGGAGAACGCAAAACTTGGCAACCAACAATATTACATCGACTCGTTTTTTCTAAATT TAAAGAGACTCCCTATCGTGGGGGTGATCATCATTCCAAGAAGATATATAATGGGAAAGGTAGATGAGAGAGCATTCAAAACATTGGTTATACTCATTTC TGCATCTCTATGCATCCTAGTCATTGGATGTGTCTGCATTTTGATTCTCACTAATGGAGTATCAAAGGAGATGAAACTAAGAGCAGAACTAATAAGCCAT CTTGATGCAAGGAGAAGGGCAGAGGCATCAAACAACTACAAAAGTCAGTTTCTGGCAAACATGAGTCACGAATTGAGGACTCCTATGGCTGCAGTGATTG GCCTGCTGGACATTCTTATCTGTGATGATTGTCTCACAAATGAACAATATGCAACTGTTACGCAGATCAGAAAATGCTCCACAGCTCTACTCCGGCTTCT TAACAACATACTGGATCTTAGCAAGGTTGAATCTGGAAAATTGGTTTTGGAAGATGCTGAGTTTGACTTGGGAAGGGAACTTGAAGGACTTATTGACATG TTCTCTGTTCAGTGCATTAACCACAATGTTGAGGCTGTTTTGGATCTCTCTGATGATATGCCGAAATTAGTTCGAGGAGACTCTGCCAGAGTTGTTCAAA TATTTGCAAATCTGATAAGCAATTCTATAAAGTTTACGACAACGGGTCACATTATTCTGCGTGGTTGGTGTGAGAACTTCAATACATATAATGACGCACG GTTTCATCTAGATCAGAAGAAAATGCGCTGTGCACCTAAGCCAAAACTGAGGCAACAAGGGAATCATACGAAGAAGGCCTGGAAGAAGGACAACAAAACG ATTCTTTGGTTTGAAATTGATGACACAGGCTGCGGAATTGATCCAAGCAAATGGGAGTCTGTATTCGAAAGCTTTGAACAAGCTGATCCATCAACAACTC GATTGCATGGCGGCACTGGTCTTGGACTATGCATAGTTAGAACTTTGGTTAACAAGATGGGTGGAGAAATAAAGGTTGTGAAGAAGAATGGATCCGGAAC TCTAATGCGACTATACTTGCTTCTCAATGCAGCTGCAGATGGTGCAGACCTACAATGCCAAGTAGATTTTTCCAGTCAAAATATCGTGGTTCTGTTGGCA CTATATGGCAGCATGGGCAGAGTTATTATGTCCCAATGGTTGCATAAAATTGGATTGGCCACTTTAGGAGTTTCTGATTGGAATGAACTGACACAAGTTC TTCGGAAACTCTTTCATGTCAGAAGACGTGAGAATGGCTTTGATGTTAATTGTTCTTTGAATGAACCATTAAAATCTGAAGTGCGTAATATTGAAGACAT GAAGGACCCTATATTCATCATAGTTGTTGATATAGGGTTGCTTGACTTGAGCACAGACATATGGAAGGAACAAATTAACTTCGTCGATAAATTCTCTGGA AAAGCCAAGTTTGCATGGATGCTCAATCATGATACTTCAAATGCAATAAAGATGGAGCTTCGCAAGAAGGGGCATTTACTGATGGTTAATAAACCGCTTT ACAAGGCCAAAATGATTCACATTTTGGAAACTGTCATAAAGGAGAAAGATCTTGAGAATCAAAAGAAAAGTTCGAATGCTACAAGAGCTACGACGAAGGA TATTGACATGCATGAATGTCTTGAGATTGATTCCACTCATTTTGACACTGCCAGCTCTGAAGAATCTGATACGGCTGAAATGGGCAAATCCAATTCTCCA AGCATATTTCATCTCAGAGAAAAACAAAAGGAAACAGAAAAGATCGCAACTGAATCACAGTGCCAATCATTTAAGAAGTGCTTAGTTGAATTGGCTGATG TTGATGCAGAAGCAAGAGAAGATCCATGTCAAATTAGGCCCAATTTACCAAGTACCCAATATGGAAAAGATATGCTAGTCTGCAACAAGCAAGCACCCTT CTCAACTGCAACTCAAAATGAGAGTTCTAAACACGAAGAACGAATTTCAGAAAGCAGTAGTCATAAAGAACAAGGCAATTCATATTCAAGCAAAGCAGGG AATCAACAGAAGGCTCTTGATGGCTTACGGATTCTGCTTGCAGAAGATACTCCTGTTCTTCAGAGAGTTGCAACCATCATGCTAGAAAAAATGGGGGCTA AAGTTATTGCAGTCGGAGATGGACTGCAAGCAGTAGAAGCTCTAAATTGCGTTTTGAGTGAAAAGGATCTCAAAAGGGAATCCCCTGGAGATGATGGAGA GAGAGGTTTACAAACTGATATTCAGGAATCCCCACCATATGACTTGATCCTAATGGACTGTCAGATGCCAAAGATGGACGGTTATGAAGCAACAAAAGCC ATAAGGAAATCAGAAGCAGGAACTGGCTTCCACATTCCCATTGTTGCATTAACAGCCCACGCAATGTCGTCAGATGAAGCCAAATGCTTGGAGGTTGGCA TGGATGCTTATCTAACAAAGCCAATTGACTACAAGTTGATGGTTTCCACCATTCTATCACTCACTAAAAGAACAACCTAA
AA sequence Show only first row Show all	>Potri.005G111700.2 pacid=42803064 polypeptide=Potri.005G111700.2.p locus=Potri.005G111700 ID=Potri.005G111700.2.v4.1 annot-version=v4.1 MAEEGDRRNYSSTASSNDCSPTIGTDTPIMATPLRKVCARILGFASSCRKNTAPYGRRIFYRDVEQDEFQYGNTHCLSSYYSVFVVRLAIMAMLAILIGL LTILTWHFTRSYTKKSLDTLASGLRYEILQRPILRMWNILNSTAEITAAQVKLSEYVIRRYSKPTNQAEQVEVLYEVMRDITWALFASRKALNAITINYR NGFVQAFHRDHRSNNTFYIYSDLVNYSINAKGPYDTNMFSSHQAWDDQSIHSNFSAIWYREPLDPISGEKKGKASPIPPDDLINIAGLSQVPDGVASWHV AVSKYTDSPLLQAALPVWDASNKSIVAVVGVTTSLYSVGQLMRELVEVHSGYIYLTSQEGYLLATSTNAPLLTNSTTRPNLIMAVDTEEPIIRMGARWLE KVYGNKLTPGQIVQVENAKLGNQQYYIDSFFLNLKRLPIVGVIIIPRRYIMGKVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAELISH LDARRRAEASNNYKSQFLANMSHELRTPMAAVIGLLDILICDDCLTNEQYATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLIDM FSVQCINHNVEAVLDLSDDMPKLVRGDSARVVQIFANLISNSIKFTTTGHIILRGWCENFNTYNDARFHLDQKKMRCAPKPKLRQQGNHTKKAWKKDNKT ILWFEIDDTGCGIDPSKWESVFESFEQADPSTTRLHGGTGLGLCIVRTLVNKMGGEIKVVKKNGSGTLMRLYLLLNAAADGADLQCQVDFSSQNIVVLLA LYGSMGRVIMSQWLHKIGLATLGVSDWNELTQVLRKLFHVRRRENGFDVNCSLNEPLKSEVRNIEDMKDPIFIIVVDIGLLDLSTDIWKEQINFVDKFSG KAKFAWMLNHDTSNAIKMELRKKGHLLMVNKPLYKAKMIHILETVIKEKDLENQKKSSNATRATTKDIDMHECLEIDSTHFDTASSEESDTAEMGKSNSP SIFHLREKQKETEKIATESQCQSFKKCLVELADVDAEAREDPCQIRPNLPSTQYGKDMLVCNKQAPFSTATQNESSKHEERISESSSHKEQGNSYSSKAG NQQKALDGLRILLAEDTPVLQRVATIMLEKMGAKVIAVGDGLQAVEALNCVLSEKDLKRESPGDDGERGLQTDIQESPPYDLILMDCQMPKMDGYEATKA IRKSEAGTGFHIPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.005G111700 [exp]	0	1	ATHK1.3
AT3G04740		MED14, SWP, ATM...	STRUWWELPETER, ARABIDOPSIS MED...		Potri.005G053700 [exp]	1.73	0.8578	Pt-SWP.2
AT2G17820		AHK1, ATHK1	histidine kinase 1 (.1)		Potri.007G056400 [exp]	2.23	0.8508	Pt-ATHK1.2
AT4G21620			glycine-rich protein (.1.2)		Potri.004G036500 [exp]	3.16	0.8651
AT4G33420			Peroxidase superfamily protein...		Potri.004G134800 [exp]	3.16	0.8689
AT1G33440			Major facilitator superfamily ...		Potri.019G067500 [exp]	4.89	0.8194
AT3G46130	MYB	PFG3, ATMYB111 ...	myb domain protein 48 (.1.2.3....		Potri.009G027300 [exp]	5.65	0.8517	MYB111.1,MYB023
AT1G78800			UDP-Glycosyltransferase superf...		Potri.001G393000 [exp]	6.92	0.8272
AT1G05960			ARM repeat superfamily protein...		Potri.007G128000 [exp]	9.27	0.7431
AT4G31270	Trihelix		sequence-specific DNA binding ...		Potri.018G002801 [exp]	9.59	0.7035
AT3G23640		HGL1	heteroglycan glucosidase 1 (.1...		Potri.001G129600 [exp]	10.48	0.8120

Compare expression of checked genes

Potri.005G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.