Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21430 424 / 1e-147 YUC11 Flavin-binding monooxygenase family protein (.1) AT1G48910 406 / 7e-141 YUC10 YUCCA 10, Flavin-containing monooxygenase family protein (.1) AT5G43890 374 / 2e-127 YUCCA5, SUPER1, YUC5 YUCCA5, SUPPRESSOR OF ER 1, Flavin-binding monooxygenase family protein (.1) AT4G28720 370 / 5e-126 YUC8 YUCCA 8, Flavin-binding monooxygenase family protein (.1) AT1G04180 362 / 6e-123 YUC9 YUCCA 9 (.1) AT4G13260 350 / 3e-118 YUC2 YUCCA2, Flavin-binding monooxygenase family protein (.1) AT1G04610 347 / 5e-117 YUC3 YUCCA 3 (.1) AT4G32540 338 / 2e-113 YUC1, YUC YUCCA 1, YUCCA, Flavin-binding monooxygenase family protein (.1) AT5G11320 330 / 1e-110 YUC4 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) AT5G25620 327 / 3e-109 YUC6 YUCCA6, Flavin-binding monooxygenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G186100 [exp] 514 / 0 AT1G21430 448 / 2e-157 Flavin-binding monooxygenase family protein (.1) Potri.016G003300 [exp] 466 / 1e-164 AT1G21430 436 / 7e-153 Flavin-binding monooxygenase family protein (.1) Potri.002G207400 [exp] 424 / 5e-148 AT1G48910 429 / 3e-150 YUCCA 10, Flavin-containing monooxygenase family protein (.1) Potri.002G254200 [exp] 374 / 1e-127 AT4G28720 694 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Potri.006G243400 [exp] 358 / 2e-121 AT5G25620 608 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.018G036800 [exp] 350 / 6e-118 AT5G25620 576 / 0.0 YUCCA6, Flavin-binding monooxygenase family protein (.1.2) Potri.008G174600 [exp] 348 / 3e-117 AT1G04610 686 / 0.0 YUCCA 3 (.1) Potri.006G248200 [exp] 342 / 3e-115 AT5G11320 598 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Potri.010G062400 [exp] 344 / 1e-114 AT1G04610 657 / 0.0 YUCCA 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002402 [exp] 444 / 1e-155 AT1G21430 427 / 5e-149 Flavin-binding monooxygenase family protein (.1) Lus10022851 [exp] 367 / 6e-125 AT4G28720 666 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10011274 [exp] 366 / 1e-124 AT4G28720 643 / 0.0 YUCCA 8, Flavin-binding monooxygenase family protein (.1) Lus10023637 [exp] 348 / 1e-117 AT4G13260 542 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10023695 [exp] 340 / 6e-114 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10035244 [exp] 339 / 8e-114 AT1G04610 692 / 0.0 YUCCA 3 (.1) Lus10011093 [exp] 338 / 1e-113 AT4G13260 566 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10007671 [exp] 338 / 8e-113 AT4G13260 518 / 0.0 YUCCA2, Flavin-binding monooxygenase family protein (.1) Lus10013125 [exp] 333 / 7e-112 AT5G11320 579 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2) Lus10008092 [exp] 330 / 2e-110 AT5G11320 575 / 0.0 YUCCA4, Flavin-binding monooxygenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00743 [poplar] [flax] FMO-like Flavin-binding monooxygenase-like
Representative CDS sequence Show only first row Show all	>Potri.005G111800.1 pacid=42804692 polypeptide=Potri.005G111800.1.p locus=Potri.005G111800 ID=Potri.005G111800.1.v4.1 annot-version=v4.1 ATGGAAGCCGTTGATGTGGTCATTGTAGGTGCAGGACCTGCTGGGCTCGCAACATCTGCATGCCTCAACCGTCTCTCCATCCCTAACATTGTCCTTGAAA GAGAGGATTGTTATGCCTCTCTGTGGCAAAAGAGGGCTTATGACCGTCTAAAGTTACACCTCGCGAAGGAATACTGTGAACTTCCCTTCATGCCTTTCCC ATCTGATGCACCCACTTTTGTCCCTAGGAGGGGTTTCATTGATTACTTGCACAGCTATGTGTCTCATTTTAGGATTAATCCGCGATGCAATACGGCTGTT GAGTCTGCCTATCATGATGAAGAAAGTGGAAAGTGGCATATCAAGGCTAAGAAAGCAGATCTAAACGTGCATGAAGAATACGTCGCAAAGTTTCTTGTGG TCGCAACCGGTGAGAATAGTAAAGGGTTTATTCCTGAGGTGTCCGGGCTTGATAGTTTTGGTGGAGAGTTCATTCACTCAAGCAAGTACGAAAATAGCCA AAAATACAAGGGCAAAGCTGTATTAGTTGTTGGTTGTGGGAATTCAGGAATGGAGATTGCTTATGATTTGTCAAACTGGGGCGTCAAGACTTCGATCGTT GCTCGCAGTCCAGTGCATGTCCTCACCACAAATATTGTGTATATTGGTATGCGTTTGTTGAGCTATGGCGTCCCATGCAACATAGTGGACTTCATAGTTG TCTTACTAAGCAAGCTGCAGCATGGAGATATTTCAAATTACGGCTTTCCAAGACCCACAAGAGGACCGTTTTATATAAAACAAAGAGTCGGTCGAACCCC TACAATCGATGTTGGGGCTGTGGAAAAGATTAGAAGAAAAGAGGTTCAGGTATTTCCATCCATAAGAGGCATCCAAGGAAGCAAAATCGAGTTTGCCAAT GGGGAAGTTAAACAATTTGATGCCATTATCTTCGCTACTGGCTACAAAAGTACCGTGAGACACTGGCTCAAGGGTGGCCAAGACCTTTTTGATGGAAGTG GAATGCCAAAACTCTGCTTCCCTAACATCTGGAAAGGAAAAAACGGCCTTTATTGTTCTGGGTTTGCTAGAAGAGGACTGTTTGGTATCTCAGTTGACTC GCAAAATATCGCAAAAGACATTGACTTGGCATTGAGAAGTGAACGAGTATTAATTGGAATTCCGGACGCTAGGGTTTGTTGA
AA sequence Show only first row Show all	>Potri.005G111800.1 pacid=42804692 polypeptide=Potri.005G111800.1.p locus=Potri.005G111800 ID=Potri.005G111800.1.v4.1 annot-version=v4.1 MEAVDVVIVGAGPAGLATSACLNRLSIPNIVLEREDCYASLWQKRAYDRLKLHLAKEYCELPFMPFPSDAPTFVPRRGFIDYLHSYVSHFRINPRCNTAV ESAYHDEESGKWHIKAKKADLNVHEEYVAKFLVVATGENSKGFIPEVSGLDSFGGEFIHSSKYENSQKYKGKAVLVVGCGNSGMEIAYDLSNWGVKTSIV ARSPVHVLTTNIVYIGMRLLSYGVPCNIVDFIVVLLSKLQHGDISNYGFPRPTRGPFYIKQRVGRTPTIDVGAVEKIRRKEVQVFPSIRGIQGSKIEFAN GEVKQFDAIIFATGYKSTVRHWLKGGQDLFDGSGMPKLCFPNIWKGKNGLYCSGFARRGLFGISVDSQNIAKDIDLALRSERVLIGIPDARVC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G21430		YUC11	Flavin-binding monooxygenase f...		Potri.005G111800 [exp]	0	1
					Potri.001G169351 [exp]	8.94	1.0000
					Potri.001G196900 [exp]	12.64	1.0000
AT3G28007		SWEET4, AtSWEET...	Nodulin MtN3 family protein (....		Potri.001G344300 [exp]	15.49	1.0000
					Potri.002G092751 [exp]	18.97	1.0000
AT5G18990			Pectin lyase-like superfamily ...		Potri.004G033700 [exp]	19.41	1.0000
					Potri.003G015466 [exp]	20.00	1.0000
					Potri.003G072050 [exp]	20.97	1.0000
AT1G30190			unknown protein		Potri.004G065300 [exp]	23.66	1.0000
AT1G16730		UP6	unknown protein 6 (.1)		Potri.007G003700 [exp]	28.98	1.0000
AT1G69180	YABBY	CRC	CRABS CLAW, Plant-specific tra...		Potri.008G097800 [exp]	31.62	1.0000	CRC.1

Compare expression of checked genes

Potri.005G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.