Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51280 595 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48850 281 / 2e-91 ATSDI1 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G04770 278 / 1e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G20900 263 / 1e-82 TDM1, MS5 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44330 229 / 2e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G22794 85 / 2e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056500 [exp] 880 / 0 AT3G51280 603 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G177600 [exp] 300 / 2e-99 AT1G04770 384 / 8e-135 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G465401 [exp] 305 / 8e-96 AT4G20900 337 / 1e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G050600 [exp] 288 / 8e-95 AT1G04770 381 / 6e-134 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.011G163500 [exp] 299 / 5e-94 AT4G20900 328 / 1e-105 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G240700 [exp] 285 / 5e-93 AT5G48850 404 / 9e-143 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.009G033201 [exp] 52 / 2e-08 AT1G04770 53 / 2e-09 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041886 [exp] 668 / 0 AT3G51280 566 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028433 [exp] 665 / 0 AT3G51280 569 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10041887 [exp] 656 / 0 AT3G51280 572 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10028434 [exp] 622 / 0 AT3G51280 560 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011872 [exp] 286 / 7e-94 AT5G48850 392 / 2e-138 SULPHUR DEFICIENCY-INDUCED 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10000753 [exp] 274 / 8e-89 AT1G04770 391 / 2e-137 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011738 [exp] 273 / 2e-88 AT1G04770 389 / 1e-136 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10023256 [exp] 279 / 7e-88 AT4G20900 330 / 4e-108 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022806 [exp] 283 / 2e-86 AT5G05740 644 / 0.0 ethylene-dependent gravitropism-deficient and yellow-green-like 2 (.1.2.3) Lus10008852 [exp] 271 / 1e-84 AT4G20900 311 / 7e-101 MALE-STERILE 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.005G112100.2 pacid=42803078 polypeptide=Potri.005G112100.2.p locus=Potri.005G112100 ID=Potri.005G112100.2.v4.1 annot-version=v4.1 ATGATGCAGGATATGTGGAACGCACCACCTGGTTTTAGACCAACAAAATCTGCTCCAACTTCACCAGCAAAACCACTTGGTGTTTCAAGAACTCGATCTG AGTCATTTCAAGCTATCCACAAAGTCCCTGTTGGTGACTCTCCTTATGTTAGAGCCAAGAATGTTCAGTTGGTTGATAAAGATCCAGAAAAGGCAGTACC TTTGTTTTGGGCAGCAATAAATGCTGGGGATAGAGTGGATAGTGCATTGAAAGATATGGCTATCGTTATGAAGCAACAAAATAGGGCCGAGGAAGCCATT GAGGCTATCAAATCATTGCGACATCGATGTTCTGATCAAGCCCAAGAGTCTCTTGATAATATTCTTTTAGATCTTTACAAGAGATGTGGAAGATTGGATG ACCAAATAGCATTGCTGAAGCACAAGCTGTTCTTAATTCAACAAGGGCTTGCTTTCAATGGAAAACGAACAAAGACTGCAAGGTCTCAAGGGAAGAAATT TCAGGTTTCTGTGGAACAAGAAGCAACCAGATTACTGGGGAACTTGGGATGGGCATTGATGCAACAAAACAACTACATTGAAGCAGAAGATGCCTATAGA AGGGCACTTGCTACAGCACCGGACAACAACAAGATGTGCAATCTTGGGATTTGTTTGATGAAGCAGGGGAGAATTGGTGAGGCTAAAGAGACATTGCGGC GAGTGAAACCAGCAGTGGCCGACGGGCCAAGAGGTGTAGATTCGCATCTCAAAGCCTATGAAAGGGCACAGCAAATGCTCAAGGACCTTGAATCTGAGAT GATGAGCAAAGGAGGCGATCGGGTTGAACAAAGGAGGCTCTTTGATGCCTTCCTTGGTTCTTCATCAATTTGGCAGCCTCAGCCTTGCAAGGATCACCTG CAAGCAACCAGTACAAAATCTCATCATGATGATTTCGCCAATGAGAATGTTGATTCCAATATAGTATCGAACCAAAACCAGATGTTGTTTCCTCAACAGA ATAGTGTCAAACAGTTTGCTCCTTTTGGGAATTTATGGAATGTCGATGCACCTCCATTCTATTCCTCCAAATTGGTAAAGGAGCCAATTAAGGAACCAAG TCATGAATTCCATGAGACCCTTAAGAGGACGAGGTCGGGAAAAACTGCTACTTCAAACAGAAAGATTGAAATGGGGTTGTTCACCACACAATCTGTGGAA CCAGGAAAACCCAAACCAAAGACGAGGAGGCTATCTGATGAAACAGAAGACAAGTTGTCACAATTGTTGCCAGATAATGATGACTTTGACGAGGCCATTC TTGCAGCGATTCTAGGTCCTGCAACCAACTCAAGAAAGACAGCAGTGAAGGTAGTTGAAACTGCCTCCTCTGGGATCTTTCAGCAGAGGAAGATTGAAAA GCGACTTAAGGTTTTTCAGGACATCACTCTATCTCTCAGCCCAAGAGCCTGA
AA sequence Show only first row Show all	>Potri.005G112100.2 pacid=42803078 polypeptide=Potri.005G112100.2.p locus=Potri.005G112100 ID=Potri.005G112100.2.v4.1 annot-version=v4.1 MMQDMWNAPPGFRPTKSAPTSPAKPLGVSRTRSESFQAIHKVPVGDSPYVRAKNVQLVDKDPEKAVPLFWAAINAGDRVDSALKDMAIVMKQQNRAEEAI EAIKSLRHRCSDQAQESLDNILLDLYKRCGRLDDQIALLKHKLFLIQQGLAFNGKRTKTARSQGKKFQVSVEQEATRLLGNLGWALMQQNNYIEAEDAYR RALATAPDNNKMCNLGICLMKQGRIGEAKETLRRVKPAVADGPRGVDSHLKAYERAQQMLKDLESEMMSKGGDRVEQRRLFDAFLGSSSIWQPQPCKDHL QATSTKSHHDDFANENVDSNIVSNQNQMLFPQQNSVKQFAPFGNLWNVDAPPFYSSKLVKEPIKEPSHEFHETLKRTRSGKTATSNRKIEMGLFTTQSVE PGKPKPKTRRLSDETEDKLSQLLPDNDDFDEAILAAILGPATNSRKTAVKVVETASSGIFQQRKIEKRLKVFQDITLSLSPRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.005G112100 [exp]	0	1
AT3G51280			Tetratricopeptide repeat (TPR)...		Potri.007G056500 [exp]	9.27	0.8954
AT5G66230			Chalcone-flavanone isomerase f...		Potri.005G114100 [exp]	9.64	0.8958
AT3G51740		IMK2	inflorescence meristem recepto...		Potri.006G104300 [exp]	17.40	0.8890	Pt-RHG1.3
AT5G62390		ATBAG7	BCL-2-associated athanogene 7 ...		Potri.012G126000 [exp]	18.33	0.8138	CBP.2
AT1G63100	GRAS		GRAS family transcription fact...		Potri.001G109400 [exp]	23.45	0.8797
AT1G48405			Kinase interacting (KIP1-like)...		Potri.012G038000 [exp]	26.38	0.8392
AT4G11080		3xHMG-box1	3xHigh Mobility Group-box1, HM...		Potri.001G093700 [exp]	31.63	0.8703
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	34.69	0.8567
AT4G28230			unknown protein		Potri.019G116200 [exp]	38.52	0.8369
AT1G08560		KN, ATSYP111, S...	KNOLLE, syntaxin of plants 11...		Potri.013G053200 [exp]	39.49	0.8652	Pt-SYP111.1

Compare expression of checked genes

Potri.005G112100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.