Plant FIBer expression Database

Potri.005G112150 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G50210 40 / 0.0002 SUFE3, OLD5, QS SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G085300
[exp]
83 / 7e-20 AT5G50210 989 / 0.0 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Potri.012G089500
[exp]
82 / 1e-19 AT5G50210 401 / 1e-134 SULFUR E 3, ONSET OF LEAF DEATH 5, quinolinate synthase (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.005G112150.1 pacid=42803583 polypeptide=Potri.005G112150.1.p locus=Potri.005G112150 ID=Potri.005G112150.1.v4.1 annot-version=v4.1
ATGAAAATGGAGGAGGAGTATAAGCAAGAACTACCTTCTTTCTCCACCTCTAAATCTCTTAAATACATTCACTCACCATCTTCATATCCAAAACCCTCAA
ATTCCTCGCCTTTCACCTGTATAGCAATCATCTTCTCTCCCACACGGACAACTGAGTTTGTCCCAGGTAAGCTCCACCATTTAATCATCTTAATTTGGTC
ACTCTCTCAACCAATCGACCTTGTTAGATGCCTTCTCCACTGTACAACCCTCCTCTCTCCACTACCAAACTCTTTCCGAGTCAATTCAAATCAGGCCATG
GTTTATGTTGGAGGCACAATTAGATAA
AA sequence
>Potri.005G112150.1 pacid=42803583 polypeptide=Potri.005G112150.1.p locus=Potri.005G112150 ID=Potri.005G112150.1.v4.1 annot-version=v4.1
MKMEEEYKQELPSFSTSKSLKYIHSPSSYPKPSNSSPFTCIAIIFSPTRTTEFVPGKLHHLIILIWSLSQPIDLVRCLLHCTTLLSPLPNSFRVNSNQAM
VYVGGTIR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.005G112150
[exp]
0 1
AT3G27750 EMB3123 EMBRYO DEFECTIVE 3123, unknown... Potri.003G051400
[exp]
1.73 0.9816
AT1G69935 SHW1 short hypocotyl in white light... Potri.008G190900
[exp]
3.46 0.9772
AT3G08010 ATAB2 RNA binding (.1) Potri.009G059800
[exp]
4.24 0.9789
AT4G38225 unknown protein Potri.004G207400
[exp]
6.48 0.9735
AT4G20360 AtRab8D, AtRABE... RAB GTPase homolog E1B (.1) Potri.001G110200
[exp]
8.94 0.9758
AT3G56010 unknown protein Potri.010G186800
[exp]
9.79 0.9727
AT1G32060 PRK phosphoribulokinase (.1) Potri.003G099400
[exp]
10.58 0.9767
AT1G73885 unknown protein Potri.015G053800
[exp]
10.67 0.9746
AT1G07650 Leucine-rich repeat transmembr... Potri.004G063900
[exp]
13.74 0.9640
AT1G28140 unknown protein Potri.001G100300
[exp]
15.00 0.9724

Potri.005G112150 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.