Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G51290 576 / 0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT1G02110 276 / 2e-83 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 259 / 2e-76 Protein of unknown function (DUF630 and DUF632) (.1) AT2G34670 221 / 6e-63 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT5G25590 172 / 4e-45 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 160 / 7e-43 unknown protein AT1G21740 146 / 2e-36 Protein of unknown function (DUF630 and DUF632) (.1) AT1G77500 142 / 3e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 133 / 3e-32 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 126 / 3e-30 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G056700 [exp] 732 / 0 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 298 / 1e-90 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.002G137600 [exp] 289 / 2e-87 AT3G60320 699 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.009G137500 [exp] 184 / 1e-49 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.006G244100 [exp] 182 / 7e-49 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 177 / 5e-47 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 176 / 6e-47 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 171 / 3e-45 AT1G52320 615 / 0.0 unknown protein Potri.004G177200 [exp] 167 / 8e-44 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028431 [exp] 644 / 0 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10041884 [exp] 623 / 0 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10042910 [exp] 245 / 1e-72 AT3G60320 727 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10036155 [exp] 241 / 2e-70 AT2G34670 516 / 3e-175 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) Lus10028207 [exp] 219 / 3e-64 AT3G60320 570 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10025777 [exp] 178 / 1e-47 AT1G52320 652 / 0.0 unknown protein Lus10022116 [exp] 175 / 2e-46 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 174 / 5e-46 AT1G52320 747 / 0.0 unknown protein Lus10037901 [exp] 160 / 9e-43 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10024007 [exp] 157 / 5e-40 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [poplar] [flax] DUF632 Protein of unknown function (DUF632) PF04783 [poplar] [flax] DUF630 Protein of unknown function (DUF630)
Representative CDS sequence Show only first row Show all	>Potri.005G112300.1 pacid=42804366 polypeptide=Potri.005G112302.1.p locus=Potri.005G112300 ID=Potri.005G112300.1.v4.1 annot-version=v4.1 ATGGGCTGTTGTTACTCAAGAATAGAGAGAGAGGAAATGGTGTCAAGATGCAAAGCAAGAAAGAGATACATGAAACAATATGTTAAAGCAAGACAATCGC TTTCTGCTTCGCATGCAATGTACATCCGTTCACTTCGTAGTACTGGATCAGCCCTCCTTCAGTTCTCCAGCAATGAATCAGACCACCACCTCCGCCTGCC ACCCATTCACCCCTCTCCACCACCACTTCCACCCACCCCTCCACCACCTCCACCACCTCCAATGAGTCCAAGTTCAGACACCTGGACGACCACCACCACC ACAACCGCCGCCTCTCCTCTTCCCCCGCCTCCTCCGCCTCCGCCAGTGGCGGGGTCGGGTTGGGATTTCTGGGACCCCTTTGTCCCTCCTCCGCCGATAT CAGTGGAGGGGCAGGAGTGGGAGGAGGTGACCACCACCATCACGACATCGGAAATGGTGGCGGTTGCGCCGCCTTCGGTAGCTAGTCGGTTTCCTAAAGA GAACGCTAGTGGAAGTGGAAGTGAGCTTGCTATGGTGGTTTCAAGAAATAGCAAAGATTTAGTGGAGATCATTAAAGAAGTTGATGAATATTTTCTTAAA GCTGCTGATGCTGGCGGTCAACTTTCTCGTGTTTTAGAAGTCTCGAGCCCTAACTTGTCAGCAAGACAAGGCAAAGGAGGTAGAGTTTATAATTATGGAT GCAATTTGACTAGCCCATCATCGTGGACATGGGGTTCAAGCCCAAAACTTGATGGGTTTGGAAAGATGAGTGAAGAAATGGTGGTTAGTCATGTAGGAAG TGGGGGTGTCGCTCATGTTAGCCACTGTTCCACTGTGGAGAGACTATATGCTTGGGAGAAGAAACTATTCATAGAGGTCAAGAATGCTGAGAGTTTGAAA ATTGAGCATGAGAAGAAGGTGGCATTGCTTAGGAAGCTAGAGGCGAGGAGGGCTGACTATGTAAAGACGGAGAAGATCAAGAAAGAAGTAGAGAAATTGG AGTCCCAAATGATAGTTGCTACTCAGGGCATTGAAACTACCTCTGCTGAAATCATCAAATTAAGGGAGACAGAGCTTTACCCTCAACTCCTTGAGCTTGT GAAAGGTTTAATGTGCATGTGGAGAGGCATGTACGAGTCACACCAGGTCCAGACACACATTGTTCAGCAGCTCAAATATCTCAACGCTATCCCATCTACT GAGCCGACGTCAGAGATTCATAGACAGTCGACTCTCCAGCTTGAGCTTGAGGTCCAGCAATGGCACCATTCATTCTGCAATGTTGTCAAGGCTCAGCGGG ACTACATCCAGTCCCTCACAGGCTGGCTCCGGCTCAGCCTTTTCCAGTTTAGCAAAAACCCAATTTCCAGAACCAGTCAGGAATCAAGAATTTACTCCCT TTGCGAAGAATGGAACCATGCAGTTGATAGAATTCCTGACAAAGTGGCATCAGAAGGAATCAAGAGCTTCATAACAGTAATTCATGCTATTGTAGTTCAA CAAGCAGAAGAGCATAAGCAAAAGAAGAAGTCAGAATCTGCATTCAAGGAGTTTGAGAAGAAGGTTGCTGAGCTTAGAGCTTTGGAGAGCAAGTATGGTC CGTATTCAATGCCTGAAACTTCGAGCACAATACGCATCAAGGACCCAGTTACGGAGAAACGAGCAAAGGTTGAGATCTTGCGGGCAAGGGCAGAGGAAGA AAAGAGTAAGCATGAAAAGTTGATTAGCGTAACAAGGTCAATGACATCGAATAATCTCCAGATGGGATTCCCACATGCTTTTCAGGCAATGGTGGGTTTT TCGAGTGTGTGTATGAATGTTTTTGAATCGGTATACAATCAAGCCAAGAATGCTGACCAGGAACATGATGTGAAGAGAGAAGAACTAGATTTAGGATAA
AA sequence Show only first row Show all	>Potri.005G112300.1 pacid=42804366 polypeptide=Potri.005G112302.1.p locus=Potri.005G112300 ID=Potri.005G112300.1.v4.1 annot-version=v4.1 MGCCYSRIEREEMVSRCKARKRYMKQYVKARQSLSASHAMYIRSLRSTGSALLQFSSNESDHHLRLPPIHPSPPPLPPTPPPPPPPPMSPSSDTWTTTTT TTAASPLPPPPPPPPVAGSGWDFWDPFVPPPPISVEGQEWEEVTTTITTSEMVAVAPPSVASRFPKENASGSGSELAMVVSRNSKDLVEIIKEVDEYFLK AADAGGQLSRVLEVSSPNLSARQGKGGRVYNYGCNLTSPSSWTWGSSPKLDGFGKMSEEMVVSHVGSGGVAHVSHCSTVERLYAWEKKLFIEVKNAESLK IEHEKKVALLRKLEARRADYVKTEKIKKEVEKLESQMIVATQGIETTSAEIIKLRETELYPQLLELVKGLMCMWRGMYESHQVQTHIVQQLKYLNAIPST EPTSEIHRQSTLQLELEVQQWHHSFCNVVKAQRDYIQSLTGWLRLSLFQFSKNPISRTSQESRIYSLCEEWNHAVDRIPDKVASEGIKSFITVIHAIVVQ QAEEHKQKKKSESAFKEFEKKVAELRALESKYGPYSMPETSSTIRIKDPVTEKRAKVEILRARAEEEKSKHEKLISVTRSMTSNNLQMGFPHAFQAMVGF SSVCMNVFESVYNQAKNADQEHDVKREELDLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G51290			Protein of unknown function (D...		Potri.005G112300 [exp]	0	1
AT3G51930			Transducin/WD40 repeat-like su...		Potri.003G202700 [exp]	2.82	0.8596
AT4G14310			Transducin/WD40 repeat-like su...		Potri.008G169200 [exp]	9.59	0.8878
AT2G35585			unknown protein		Potri.008G140000 [exp]	16.52	0.8278
AT5G62550			unknown protein		Potri.015G063700 [exp]	22.84	0.8634
AT3G48210			unknown protein		Potri.015G080900 [exp]	25.45	0.8397
AT5G05940		ATROPGEF5, ROPG...	ROP guanine nucleotide exchang...		Potri.010G196000 [exp]	29.58	0.8433
AT1G21510			unknown protein		Potri.002G076200 [exp]	29.83	0.8558
AT4G20430			Subtilase family protein (.1.2...		Potri.001G440300 [exp]	30.19	0.8437
AT2G26180		IQD6	IQ-domain 6 (.1)		Potri.006G226600 [exp]	31.74	0.8398
AT5G53250		AGP22, ATAGP22	arabinogalactan protein 22 (.1...		Potri.003G136600 [exp]	34.49	0.8340

Compare expression of checked genes

Potri.005G112300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.