Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G34950 618 / 0 Major facilitator superfamily protein (.1) AT2G16660 598 / 0 Major facilitator superfamily protein (.1) AT1G80530 285 / 3e-89 Major facilitator superfamily protein (.1) AT2G28120 278 / 3e-86 Major facilitator superfamily protein (.1) AT5G14120 270 / 4e-83 Major facilitator superfamily protein (.1) AT3G01930 264 / 7e-81 Major facilitator superfamily protein (.1.2) AT5G50520 260 / 6e-80 Major facilitator superfamily protein (.1) AT5G50630 260 / 6e-80 Major facilitator superfamily protein (.1) AT2G39210 255 / 2e-77 Major facilitator superfamily protein (.1) AT1G74780 237 / 3e-71 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G173400 [exp] 658 / 0 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 650 / 0 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1) Potri.006G060900 [exp] 316 / 7e-101 AT1G80530 632 / 0.0 Major facilitator superfamily protein (.1) Potri.003G012300 [exp] 300 / 6e-95 AT1G80530 650 / 0.0 Major facilitator superfamily protein (.1) Potri.001G204700 [exp] 284 / 1e-88 AT1G80530 625 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 283 / 5e-88 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 276 / 1e-85 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 267 / 5e-82 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 265 / 2e-81 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025053 [exp] 606 / 0 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1) Lus10034491 [exp] 601 / 0 AT4G34950 788 / 0.0 Major facilitator superfamily protein (.1) Lus10001678 [exp] 308 / 5e-98 AT1G80530 649 / 0.0 Major facilitator superfamily protein (.1) Lus10028803 [exp] 294 / 2e-92 AT1G80530 707 / 0.0 Major facilitator superfamily protein (.1) Lus10041962 [exp] 291 / 2e-91 AT1G80530 715 / 0.0 Major facilitator superfamily protein (.1) Lus10017480 [exp] 286 / 1e-89 AT1G80530 702 / 0.0 Major facilitator superfamily protein (.1) Lus10017971 [exp] 286 / 2e-89 AT1G80530 716 / 0.0 Major facilitator superfamily protein (.1) Lus10035203 [exp] 273 / 3e-84 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 272 / 6e-84 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10014640 [exp] 243 / 6e-73 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF06813 [poplar] [flax] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Potri.005G112400.1 pacid=42802870 polypeptide=Potri.005G112400.1.p locus=Potri.005G112400 ID=Potri.005G112400.1.v4.1 annot-version=v4.1 ATGTGTCCATTGTTATCTCCTGCATCTCCTGCTGGAAAATGGTTAGGATTTGTTACTGCAATATGGGTGCAGGCAAGCTGCGGTAACAACTACACCTTTT CCAACTACTCAGATGCTTTAAAATCAATCATGGCTCTTACTCAGCTGGAGCTCAATACTCTATCTGTTGCTAAAGACGTTGGAAAGGCCTTTGGTCTATT GTCTGGCATTGCTTCAGATCGTTGGTCAACTTCTGTAATACTCCTTATTGGATCATTTGAAGGGCTCATAGGATATGGAGTTCAATGGCTTGTTGTTAGC CAGCGTATCCATCCTCTTCCTTACTGGCAGATGTGTATATTTTTGTGCTTGGGAGGCAACAGCACAACATGGATGAACACGGCAGTTCTTGTAACTTGCA TGCGGAACTTTCCAAAAAATCGCGGCCCCGTCTCCGGAATCCTGAAGGGTTATGTAGGACTCAGCACAGCAATATTTACTGATATTTGCACAGCTCTTTT CTCCTCCAATCCTTCTGCATTTCTCCTAATTCTTGCTATTGTTCCTGCTATCATTTGCCTTGCTGCTATTCTTTTCCTCCGCGAAACCGCATCTGCTGCT GGTCCTATAGAGGAAAAGGAAGAAGCCAGATTTTTCAACATCTTTAATGCCATTGCCATTATAGCAGCTGCCTATCTCTTGGCATTTGACATCACTGGAA ATCATGGTCATGTTGTCTCCCTTGTATTTGTTGCAGGACTAATATTCCTTCTAGCAAGTCCATTATTTGTTCCTTTATATTCGGTTCTGTTGAAGCTTAA GTCCAATTCGGATACTGAGCAGCAGATTAAGGAACCATTACTTGTTGGCCCAGAAGATTCACCAGCAAAGGCACAGAAGCCAGAGCCAGCAACAACAGTC AGTGTTGAAGTGGAGAATGCTGGAATCAAGCAACGACCAATGATTGGGGAGGATCACACAATCATCGAAATGATACGGACATATGATTTCTGGGTTTTGT TCATATCATTCCTCTGTGGTGTGGGTACTGGAATGTGTGTAATGAACAACTTGGGGCAGATGGGCCTGGCTCTTGGATACATTGATGTATCCATTTTTGT TTCTCTCACCAGCATTTGGGGATTTTTCGGACGTATTATTTCCGGTCTGGTATCAGAACAGCTCCTCTGGAAATTTGGGACACCAAGACCTCTATGGAAT GCAGCTTCTCAAGTCCTAATGACACTAGGATTTGTCATCATGGCATTGGCCTTGCCCGGATCTCTATATATTGGTTCAATCTTGGTTGGAATATGCTATG GAGTTCGTCTGACCATTACTGTCGCAGTAGCCTCAGAACTATTTGGTCTCAAATATTATGGCTTGTTATACAACATTCTCATTCTTAATCTTCCACTGGG TTCTTTCCTCTTCTCTGGCCTGCTTGCTGGTTATCTTTACGATGCTCAAGCCGCTAGAAGCCCTGCTGGTGGTGGCAATACCTGTGTTGGTCCCCATTGC TATTTCCTTGTCTTCCTGATAATGGCTCTTGCCTGTGTTATTGGGTTTGGGTTAGATGTGCTCCTAGCAATTAGAACAAAGAAGGTATACTCCAAGATTT ACACAGACAGGAAATTTAGTCCAGCTTCAACAGTTGCTTAG
AA sequence Show only first row Show all	>Potri.005G112400.1 pacid=42802870 polypeptide=Potri.005G112400.1.p locus=Potri.005G112400 ID=Potri.005G112400.1.v4.1 annot-version=v4.1 MCPLLSPASPAGKWLGFVTAIWVQASCGNNYTFSNYSDALKSIMALTQLELNTLSVAKDVGKAFGLLSGIASDRWSTSVILLIGSFEGLIGYGVQWLVVS QRIHPLPYWQMCIFLCLGGNSTTWMNTAVLVTCMRNFPKNRGPVSGILKGYVGLSTAIFTDICTALFSSNPSAFLLILAIVPAIICLAAILFLRETASAA GPIEEKEEARFFNIFNAIAIIAAAYLLAFDITGNHGHVVSLVFVAGLIFLLASPLFVPLYSVLLKLKSNSDTEQQIKEPLLVGPEDSPAKAQKPEPATTV SVEVENAGIKQRPMIGEDHTIIEMIRTYDFWVLFISFLCGVGTGMCVMNNLGQMGLALGYIDVSIFVSLTSIWGFFGRIISGLVSEQLLWKFGTPRPLWN AASQVLMTLGFVIMALALPGSLYIGSILVGICYGVRLTITVAVASELFGLKYYGLLYNILILNLPLGSFLFSGLLAGYLYDAQAARSPAGGGNTCVGPHC YFLVFLIMALACVIGFGLDVLLAIRTKKVYSKIYTDRKFSPASTVA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G34950			Major facilitator superfamily ...		Potri.005G112400 [exp]	0	1
AT1G43800			Plant stearoyl-acyl-carrier-pr...		Potri.005G187600 [exp]	1.73	0.9733
AT1G65820			microsomal glutathione s-trans...		Potri.017G140900 [exp]	3.16	0.9662
AT2G39510			nodulin MtN21 /EamA-like trans...		Potri.008G051500 [exp]	4.89	0.9481
AT1G52190			Major facilitator superfamily ...		Potri.018G041500 [exp]	7.34	0.9432
AT4G37760		SQE3	squalene epoxidase 3 (.1)		Potri.012G120676 [exp]	7.41	0.9307
AT1G52190			Major facilitator superfamily ...		Potri.018G041400 [exp]	7.93	0.9422
AT4G23260		CRK18	cysteine-rich RLK (RECEPTOR-li...		Potri.005G014950 [exp]	8.00	0.8985
AT1G52190			Major facilitator superfamily ...		Potri.018G040500 [exp]	8.00	0.9396
AT4G38260			Protein of unknown function (D...		Potri.005G252250 [exp]	8.48	0.9176
AT1G52190			Major facilitator superfamily ...		Potri.018G041600 [exp]	10.48	0.9354

Compare expression of checked genes

Potri.005G112400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.