Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G38660 349 / 5e-120 Pathogenesis-related thaumatin superfamily protein (.1.2) AT4G24180 341 / 3e-118 ATTLP1 THAUMATIN-LIKE PROTEIN 1 (.1) AT1G20030 285 / 3e-95 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75800 283 / 2e-94 Pathogenesis-related thaumatin superfamily protein (.1) AT1G19320 268 / 2e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT2G17860 266 / 6e-89 Pathogenesis-related thaumatin superfamily protein (.1) AT4G36000 260 / 4e-87 Pathogenesis-related thaumatin superfamily protein (.1) AT1G75030 261 / 6e-87 ATLP-3 thaumatin-like protein 3 (.1) AT4G36010 261 / 2e-86 Pathogenesis-related thaumatin superfamily protein (.1.2) AT1G75050 259 / 2e-86 Pathogenesis-related thaumatin superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G132500 [exp] 369 / 9e-128 AT4G38660 338 / 3e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G241000 [exp] 365 / 1e-126 AT4G24180 348 / 5e-121 THAUMATIN-LIKE PROTEIN 1 (.1) Potri.004G173200 [exp] 364 / 6e-126 AT4G38660 357 / 5e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020400 [exp] 362 / 2e-125 AT4G38660 357 / 2e-123 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.005G240900 [exp] 294 / 7e-99 AT1G75800 398 / 7e-140 Pathogenesis-related thaumatin superfamily protein (.1) Potri.005G112700 [exp] 285 / 9e-96 AT4G36010 372 / 3e-130 Pathogenesis-related thaumatin superfamily protein (.1.2) Potri.002G020500 [exp] 285 / 2e-95 AT1G75800 404 / 7e-142 Pathogenesis-related thaumatin superfamily protein (.1) Potri.009G132200 [exp] 266 / 5e-88 AT4G38670 410 / 2e-145 Pathogenesis-related thaumatin superfamily protein (.1.2.3) Potri.012G004800 [exp] 259 / 3e-85 AT5G24620 358 / 1e-122 Pathogenesis-related thaumatin superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028447 [exp] 402 / 5e-141 AT4G38660 359 / 4e-124 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041899 [exp] 400 / 2e-140 AT4G38660 363 / 2e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10025055 [exp] 333 / 1e-114 AT4G38660 359 / 6e-125 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10013561 [exp] 330 / 4e-113 AT4G38660 326 / 2e-112 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10017266 [exp] 324 / 1e-110 AT4G24180 322 / 7e-111 THAUMATIN-LIKE PROTEIN 1 (.1) Lus10017265 [exp] 281 / 1e-93 AT1G75800 390 / 2e-136 Pathogenesis-related thaumatin superfamily protein (.1) Lus10034534 [exp] 271 / 6e-90 AT1G75800 376 / 5e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10033136 [exp] 266 / 8e-88 AT1G75800 375 / 8e-131 Pathogenesis-related thaumatin superfamily protein (.1) Lus10028448 [exp] 265 / 1e-87 AT4G36010 332 / 9e-115 Pathogenesis-related thaumatin superfamily protein (.1.2) Lus10041901 [exp] 261 / 4e-86 AT4G36010 329 / 2e-113 Pathogenesis-related thaumatin superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0293 [poplar] [flax] CDC PF00314 [poplar] [flax] Thaumatin Thaumatin family
Representative CDS sequence Show only first row Show all	>Potri.005G112600.1 pacid=42805501 polypeptide=Potri.005G112600.1.p locus=Potri.005G112600 ID=Potri.005G112600.1.v4.1 annot-version=v4.1 ATGGATTTACTCTCATTCTCACAAAATCACCCCCATTATTGTGCTGCTTTCCTAAGCCTGCTCTTCATTTTTGAAGGTGTTTCAGGCGCTAAATTCACAT TTGTTAACAAATGTGATTTCTCAGTCTGGCCAGGAATCCTAGGCAGTCCAGAACTAGATAGCACTGGCTTTGAGCTTAGGAAAGGTAGTTCTCGCTCCTT CCAAGCCCCAACAGGCTGGTCTGGTCGCTTCTGGGGCCGAACAGGCTGCAATTTCGACTCCTCAGGCCATGGTTCCTGTGTTACTGCAGACTGTGGCTCT GGCCAAGTGGAGTGCAATGGTGCAGGAGCCACACCGCCTGCCACTTTAGCTGAATTCACTCTGGGCTCAGGCTCCCAGGATTTTTATGATGTTAGTCTTG TTGATGGATACAATTTGCCAATGATTGTAGAAGTGAGTGGGGGTTCAGGGGAGTGCGCGTCGACAGGGTGTGTCACGGACCTTAATAGGAAGTGCCCGAC GGAGCTGAGAACTGAGGGCGGCAGTGCTTGTAGGAGCGCCTGTGAGGCATTTGGGAAGCCTGAGTACTGCTGCAGCGGCGAGTACAACTCACCGGCATCT TGCAAGCCTTCCATGTATTCTCAAGTGTTCAAGAGTGCCTGTCCGAAGTCGTATAGCTACGCATACGATGATGCGACTAGCACTTTTACATGTACAGGCG CAGATTACACCATCACATTCTGCCCCAATTTCCATAGTCTAAAGTCTTCAAGTGATGCGTCTCCACAAGCAATCGGGGGCGCAGCCATTGGTGGGTCAGG GACAGAGATAGGAGGGACGGTCACCGGATCCTCAGCACAGGAAGCTGAATTACAAAGTTCATGGCTGGCAAGTTTGGCCATTGGAGAGTCAACAGGAACC CAAACCCACCATTCTTTAGTTCTCCAATTTGCATTAGTTTTGGCCACATCTCTCATTCTTGCCAACTCTCACCTGTAG
AA sequence Show only first row Show all	>Potri.005G112600.1 pacid=42805501 polypeptide=Potri.005G112600.1.p locus=Potri.005G112600 ID=Potri.005G112600.1.v4.1 annot-version=v4.1 MDLLSFSQNHPHYCAAFLSLLFIFEGVSGAKFTFVNKCDFSVWPGILGSPELDSTGFELRKGSSRSFQAPTGWSGRFWGRTGCNFDSSGHGSCVTADCGS GQVECNGAGATPPATLAEFTLGSGSQDFYDVSLVDGYNLPMIVEVSGGSGECASTGCVTDLNRKCPTELRTEGGSACRSACEAFGKPEYCCSGEYNSPAS CKPSMYSQVFKSACPKSYSYAYDDATSTFTCTGADYTITFCPNFHSLKSSSDASPQAIGGAAIGGSGTEIGGTVTGSSAQEAELQSSWLASLAIGESTGT QTHHSLVLQFALVLATSLILANSHL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	0	1
					Potri.010G144600 [exp]	1.00	0.9182
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	5.29	0.8924
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	11.40	0.8635
AT1G69040		ACR4	ACT domain repeat 4 (.1.2)		Potri.001G060100 [exp]	11.48	0.8629
AT1G75100		JAC1	J-domain protein required for ...		Potri.002G134300 [exp]	15.09	0.8922
AT3G09600	MYB	LCL5 (LHY-CCA1-...	REVEILLE 8, LHY-CCA1-LIKE5, Ho...		Potri.016G083900 [exp]	15.32	0.8883
AT5G10290			leucine-rich repeat transmembr...		Potri.007G094500 [exp]	19.97	0.7885
AT4G00150	GRAS	ATHAM3, SCL6, L...	LOST MERISTEMS 3, ARABIDOPSIS ...		Potri.001G122800 [exp]	24.33	0.8148
AT5G18670		BAM9, BMY3	BETA-AMYLASE 9, beta-amylase 3...		Potri.008G204200 [exp]	24.39	0.8087
AT5G23530		ATCXE18	carboxyesterase 18 (.1)		Potri.019G014306 [exp]	24.53	0.8741

Compare expression of checked genes

Potri.005G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.