Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66190 577 / 0 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) AT1G20020 559 / 0 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT4G05390 298 / 1e-99 ATRFNR1 root FNR 1 (.1.2) AT1G30510 298 / 5e-99 ATRFNR2 root FNR 2 (.1.2.3) AT4G24520 81 / 2e-16 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 79 / 1e-15 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 62 / 2e-10 Flavodoxin family protein (.1) AT1G15140 47 / 1e-05 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT5G20080 45 / 6e-05 FAD/NAD(P)-binding oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G057200 [exp] 634 / 0 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 294 / 2e-97 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.005G153800 [exp] 81 / 3e-16 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.002G106566 [exp] 77 / 1e-15 AT4G24520 459 / 2e-159 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 75 / 2e-14 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 72 / 2e-13 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 50 / 1e-06 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028451 [exp] 575 / 0 AT5G66190 596 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10041904 [exp] 571 / 0 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Lus10038538 [exp] 290 / 2e-95 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10023266 [exp] 235 / 1e-74 AT4G05390 569 / 0.0 root FNR 1 (.1.2) Lus10015525 [exp] 81 / 3e-16 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 79 / 1e-15 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10025485 [exp] 74 / 2e-14 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 64 / 5e-11 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 58 / 3e-09 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10017589 [exp] 59 / 4e-09 AT3G02280 810 / 0.0 Flavodoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.005G112900.1 pacid=42803521 polypeptide=Potri.005G112900.1.p locus=Potri.005G112900 ID=Potri.005G112900.1.v4.1 annot-version=v4.1 ATGGCAGCTGCAGTAACTGCTGCAGTCTCCTTTCCTTCCTCTACCAAGTCTACCTCTCTTTCTTCAAGAACCACTCTCATTGCACCAGAAAGAATCACCT TGAAAAAGGCCCCAGTTTACTACAGAGATGCGTCTGCTAGTGGAAGAGTGATTTCCATCAGAGCCCAAGTCACCACAGAGGCTCCAGTTAAGGTTGAGAA GGTATCAAAGAAGGATGATGAGGGAGTGGTTGTTAACAAGTTCAAGCCTAAGAACCCTTACACTGGAAGATGTCTTTTGAACACTAAGATCACTGGTGAT GATGCTCCTGGTGAAACTTGGCACATGGTCTTCAGCACTGAAGGAGAGGTACCCTATAGAGAAGGGCAATCAATTGGAGTAATTCCAGATGGTATTGATA AGAACGGGAAGCCTCATAAACTAAGATTATATTCAATTGCCAGCAGTGCTATTGGTGACTTTGGAGACTCCAAAACTGTTTCTTTGTGTGTGAAGAGGCT TGTCTACACCAATGAACAAGGAGAAATTGTAAAAGGAGTTTGCTCAAATTTCTTGTGTGACTTGAAACCTGGAGCTGAAGTAAAGATTACAGGGCCTGTT GGGAAAGAAATGCTTATGCCAAAAGATCCAAATGCCACTATCATTATGCTTGGAACTGGAACTGGTATTGCTCCTTTCCGATCATTCTTGTGGAAAATGT TCTTTGAGAAGCACGATGACTACAAGTTCAATGGTCTGGCATGGCTCTTCCTGGGTGTCCCGACAAGTAGCTCATTGCTCTACAAGGAGGAATTTGAGAA AATGAAGGAGAAAGCCCCCGACAACTTCAGGCTGGACTTCGCAGTCAGTAGAGAGCAAACAAACGACAAAGGGGAAAAGATGTACATCCAAACCCGGATG GCAGAATACGCAGAAGAGCTGTGGGAATTACTAAAGAAAGACAACACTTATGTCTATATGTGTGGGTTGAAGGGAATGGAGAAGGGAATTGATGAAATAA TGGTGTCATTGGCTGCTAAAGATGGCATCGATTGGCTTGAGTACAAAAGAAGTTTGAAGAAAGCAGAGCAATGGAATGTGGAAGTCTATTGA
AA sequence Show only first row Show all	>Potri.005G112900.1 pacid=42803521 polypeptide=Potri.005G112900.1.p locus=Potri.005G112900 ID=Potri.005G112900.1.v4.1 annot-version=v4.1 MAAAVTAAVSFPSSTKSTSLSSRTTLIAPERITLKKAPVYYRDASASGRVISIRAQVTTEAPVKVEKVSKKDDEGVVVNKFKPKNPYTGRCLLNTKITGD DAPGETWHMVFSTEGEVPYREGQSIGVIPDGIDKNGKPHKLRLYSIASSAIGDFGDSKTVSLCVKRLVYTNEQGEIVKGVCSNFLCDLKPGAEVKITGPV GKEMLMPKDPNATIIMLGTGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFLGVPTSSSLLYKEEFEKMKEKAPDNFRLDFAVSREQTNDKGEKMYIQTRM AEYAEELWELLKKDNTYVYMCGLKGMEKGIDEIMVSLAAKDGIDWLEYKRSLKKAEQWNVEVY

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66190		ATLFNR1	ferredoxin-NADP\(+\)-oxidoredu...		Potri.005G112900 [exp]	0	1
AT4G37930		SHMT1, STM, SHM...	SERINE HYDROXYMETHYLTRANSFERAS...		Potri.008G002900 [exp]	1.00	0.9852	SHMT2,SHM1.2
AT4G03520		ATHM2	Thioredoxin superfamily protei...		Potri.002G073000 [exp]	3.16	0.9790
AT4G29590			S-adenosyl-L-methionine-depend...		Potri.006G150500 [exp]	3.46	0.9774
AT1G57770			FAD/NAD(P)-binding oxidoreduct...		Potri.003G005800 [exp]	3.74	0.9730
AT4G23420			NAD(P)-binding Rossmann-fold s...		Potri.015G146600 [exp]	6.48	0.9673
AT5G47435			formyltetrahydrofolate deformy...		Potri.001G156600 [exp]	8.24	0.9657
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	8.66	0.9744
AT3G05270			Plant protein of unknown funct...		Potri.005G178100 [exp]	9.38	0.9520
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	9.59	0.9744
AT1G08550		AVDE1, NPQ1	ARABIDOPSIS VIOLAXANTHIN DE-EP...		Potri.013G053100 [exp]	12.32	0.9719

Compare expression of checked genes

Potri.005G112900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.